Alex Teghipco's repositories
brainSurfer
MATLAB toolbox for visualizing brain data on surfaces.
StabilitySelection
Perform stability selection in matlab using a variety of feature selection methods
CTPerfusionPipeline
A pipeline for processing CT perfusion images output by RAPID (i.e., conversion to scalar, co-registration, normalization)
partialDistanceCorrelation
Perform a partial correlation but using the distance correlation measure
PLSwithStabSelVIP
Train and test a tuned PLS model, either on its own or with VIP as a feature selection procedure with stability selection as a wrapper
BrainageRRegional
brainageR scripts edited to make predictions based on regional GM, WM, and CSF
BrainMontager
Make brain montages with and without outlines
ALE_template
This script formats coordinates for meta-analysis in gingerAle
BICforClustering
Evaluate clustering solutions using BIC and AIC
bimodalityCoefficient
Implementation of approach described in "Good things peak in pairs: a note on the bimodality coefficient" by Pfister and colleagues (2013)
Correlogram
Create beautiful tiles of scatterplots between variables in MATLAB
MetaAnalysisResources
A kind of tutorial for meta-analysis with Neurosynth and BrainMap (emphasis on Neurosynth w/code)
MetaBiasNS
A version of meta.py script used by Neurosynth that will additionally determine the amount of contra-evidence required to overturn a significant effect within a voxel
consensusClustering
Package for performing consensus clustering in MATLAB. In the process of being updated...
correctedKfoldTest
Corrected repeated k-fold cross-validation test for comparing models
displacement
Compute mean framewise displacement and absolute displacement
LINDAWarper
Apply warps generated by linda to take other native space files to ch2 template space
NiftiMatlabTutorial
Learn to manipulate nifti files in Matlab by converting an atlas from surface to volume space
niftiUtility
Do all sorts of stuff with nifti files in matlab
physalign
Align physiological data collected in MRI to dicoms