Mahmood Lab @ Harvard/MGB

Mahmood Lab @ Harvard/MGB's repositories

CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

Language:PythonGPL-3.0910 16 230

HIPT

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

Language:Jupyter NotebookNOASSERTION464 11 69

PathomicFusion

Fusing Histology and Genomics via Deep Learning - IEEE TMI

Language:Jupyter NotebookGPL-3.0254 14 23

UNI

Towards a general-purpose foundation model for computational pathology - Nature Medicine

Language:Jupyter NotebookNOASSERTION188 2 27

NucleiSegmentation

cGAN-based Multi Organ Nuclei Segmentation

Language:Python181 120

PORPOISE

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

Language:Jupyter NotebookGPL-3.0168 4 13

TOAD

AI-based pathology predicts origins for cancers of unknown primary - Nature

Language:PythonAGPL-3.0168 5 12

CONCH

A vision-language foundation model for computational pathology - Nature Medicine

Language:PythonNOASSERTION149 3 6

MCAT

Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021

Language:Jupyter NotebookGPL-3.0141 4 20

Patch-GCN

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

Language:PythonGPL-3.0103 4 32

SISH

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

Language:PythonGPL-3.089 4 7

MI-Zero

Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023

Language:PythonNOASSERTION78 4 6

TriPath

Analysis of 3D pathology samples using weakly supervised AI - Cell

Language:PythonNOASSERTION60 60

SurvPath

Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

Language:Python45 4 6

HistoFL

Federated Learning for Computational Pathology - Medical Image Analysis

Language:Python43 2 1

MAPS

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

Language:Jupyter NotebookNOASSERTION30 3 2

CRANE

Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

Language:PythonGPL-3.028 2 1

varpool

Variance pooling to incorporate ITH in CPath models - MICCAI 2022

Language:Python21 50

multimodal-cancer-origin-prediction

Deep learning-based multimodal integration of histology and genomics to improves cancer origin prediction

Language:Python1400

CPATH_demographics

Demographic bias in misdiagnosis by computational pathology models - Nature Medicine

Language:PythonNOASSERTION1200

MANTA

Multimodal AI for Renal Allograft Biopsy Assessment

Language:PythonGPL-3.0400

MAXIM

MArker imputation model for multiple\underlineX IMages

Language:Jupyter NotebookNOASSERTION100

tox-foundation-ui

Language:JavaScriptMIT000