deconvolution

There are 6 repositories under deconvolution topic.

• flatironinstitute / CaImAn

  Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

  2-photoncalcium-imagingcnmfdeconvolutionmotion-correctionsource-extraction
  Language:Python 685

• moabitcoin / holy-edge

  Holistically-Nested Edge Detection

  deeplearningdetectionsegmentationdeconvolutiontensorflowvgg16edge-detection
  Language:Python 354

• digitalcytometry / ecotyper

  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

  tumormicroenvironmentsingle-cellbulk-rna-seqdeconvolution
  Language:R 197

• HelmchenLabSoftware / Cascade

  Calibrated inference of spiking from calcium ΔF/F data using deep networks

  calcium-imagingdeconvolutionspike-detectiondeep-learningtwo-photon
  Language:Jupyter Notebook 138

• preritj / segmentation

  Tensorflow implementation : U-net and FCN with global convolution

  tensorflowu-netfcnfully-convolutional-networksautoencoderdeconvolutionglobal-convolution-networksemantic-segmentationsegmentationkaggle-competitioncarvanaclassificationlarge-kernelsunettranspose-convolutionupsamplingmaskingcomputer-visionimage-maskkaggle
  Language:Python 100

• harsh1795 / CNN-DICOM-Segmentation

  DICOM Image Segmentation with CNNs in Tensorflow

  cnnconvolutional-neural-networksdeconvnetdeconvolutiondicom-imageshead-ct-scansimage-segmentationjupyter-notebookmedical-imagingpythontensorflow
  Language:Jupyter Notebook 94

• msacchi / SeismicLab

  Matlab research tools to read, write and process seismic data

  seismicradondeconvolutionreconstructionseismic-interpolationseismic-wavesseismic-processingfx-filtersfx-ssafx-eigenimagesmssa
  Language:MATLAB 85
• Sparse-SIM

  WeisongZhao / Sparse-SIM

  Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3

  microscopydeconvolutionmatlab-guisuper-resolutionimage-processingimage-restorationfluorescence-microscopy-imaging
  Language:MATLAB 85

• KevinMenden / scaden

  Deep Learning based cell composition analysis with Scaden.

  bioinformaticscell-composition-analysisdeconvolutiondeep-learningmachine-learningrna-seqsingle-cell-rna-seq
  Language:Python 76

• csgwon / pytorch-deconvnet

  Example of Deconvnet in PyTorch for VGG16

  pytorchdeconvolutionvisualizationdeep-learningneural-networkvgg16
  Language:Python 64

• roflmaostc / DeconvOptim.jl

  A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

  deconvolutionjuliamicroscopygpuimage-processing
  Language:Julia 63

• Danko-Lab / TED

  a fully Bayesian approach to deconvolve tumor microenvironment

  scrna-seqbulk-rna-seqtumor-cellsstromal-cellsexpression-profiletumor-expressiondeconvolution
  Language:R 60

• Lukeli0425 / Galaxy-Deconv

  Official code for Galaxy Image Deconvolution for Weak Gravitational Lensing with Unrolled Plug-and-Play ADMM

  astronomycomputer-visiondeconvolutiondeep-learninggalaxyimage-processingpytorch-implementation
  Language:Jupyter Notebook 60

• unfoldtoolbox / unfold

  A matlab EEG toolbox to perform overlap correction and non-linear & linear regression.

  deconvolutioneeglinear-regressionoverlapeye-trackingevent-related-potentialssplinesrerpmass-univariate
  Language:MATLAB 60

• NathanSkene / EWCE

  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

  deconvolutionsingle-cellsingle-cell-rna-seqtranscriptomics
  Language:R 57

• Biomedical-Imaging-Group / DeconvolutionLab2

  Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

  3dalgorithmsdeconvolutionimages-pluginsmicroscopy
  Language:Java 55

• unfoldtoolbox / Unfold.jl

  Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia

  eegerpjuliamixed-modelsmodelingregressiondeconvolutionoverlapsplinesevent-related-potentialsmass-univariate-modeling
  Language:Julia 52

• compneuro-da / rsHRF

  rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)

  data-analysisdeconvolutionhemodynamic-response-functionresting-state-fmrispm-plugintoolbox
  Language:MATLAB 50

• VladKarpushin / motion_deblur

  You will learn how to recover a motion blur image by Wiener filter

  opencvdeconvolutionwienerrestoration
  Language:MATLAB 49

• elgw / deconwolf

  Deconvolution of widefield microscopy images and generation of point spread functions

  born-wolf-modeldeconvolutionpoint-spread-functionrichardson-lucyscaled-heavy-ballvkfftwidefield-microscopy
  Language:C 46

• VladKarpushin / out_of_focus_deblur

  You will learn how to recover an out-of-focus image by Wiener filter

  opencvdeconvolutionwiener
  Language:C++ 41

• cansysbio / ConsensusTME

  ConsensusTME Gene Sets and R Script

  bioinformatics-pipelinecancer-genomicsconsensus-algorithmdeconvolutionimmunetumour-microenvironment
  Language:R 39

• horizon-research / systolic-array-dataflow-optimizer

  A general framework for optimizing DNN dataflow on systolic array

  dnndataflowdeconvolutionsystolic-arrays
  Language:Python 34

• luczeng / MotionBlur

  Blind deconvolution of motion blur

  deconvolutionmotion-estimationconvolutional-neural-networksdeep-learningmotion-blurmotion-blur-eliminationdeblurringblind-deconvolutionlinear-blurswiener-filterinverse-problems
  Language:Python 32
• RAMAN-Deconvolution

  MacDumi / RAMAN-Deconvolution

  Deconvolution of Raman spectra

  raman-spectradeconvolution
  Language:Python 32

• allgebrist / Causal-Deconvolution-of-Networks

  Causal Deconvolution of Networks by Algorithmic Generative Models

  algorithmic-complexitycausalitydeconvolutionnetwork-analysis
  Language:R 30

• CompEpigen / methylbert

  A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution

  bertdeconvolutionlanguage-modelmethylationtumour
  Language:Jupyter Notebook 27

• jrbourbeau / pyunfold

  Iterative unfolding for Python

  pythonunfoldingdata-analysisstatisticsregularizationdeconvolutioninverse-problems
  Language:Python 27

• WWXkenmo / ENIGMA

  A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)

  single-celldeconvolutionmatrix-completioncell-type-deconvolutioncell-type-gene-expression-analysisbulk-rna-seq-deconvolutionspatial-transcriptomics
  Language:HTML 27

• zafarrafii / CQHC-Python

  Constant-Q harmonic coefficients (CQHCs), a timbre feature designed for music signals.

  audiocqtcqt-spectrogramdeconvolutionenvelopemfccmusicnsynthpitchtimbre
  Language:Jupyter Notebook 27

• ajitjohnson / imsig

  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours

  cancerdeconvolutionimmunetranscriptomics
  Language:R 26

• kidanger / high-noise-deblurring

  Efficient Blind Deblurring under High Noise Levels (with online demo)

  deblurringdeconvolutionimage-processingkernel-estimation
  Language:C 25

• wuaipinglab / ImmuCC

  Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.

  immunoinformaticsdeconvolutionsignature-genesgene-expression
  Language:R 25

• HyeongseokSon1 / CNN_deconvolution

  CNN based non-blind deconvolution (presented at ICCP 2017)

  caffedeblurringdeconvolutionimagematlab
  Language:C++ 24

• theislab / hadge

  Comprehensive pipeline for donor demultiplexing in single cell

  deconvolutiondemultiplexingsingle-cell
  Language:Nextflow 24

• w-hc / pcv

  Pixel Consensus Voting for Panoptic Segmentation (CVPR 2020)

  cvprcvpr2020panoptic-segmentationdeconvolution
  Language:Python 23