tandem-repeats

There are 0 repository under tandem-repeats topic.

• bcgsc / straglr

  Tandem repeat expansion detection or genotyping from long-read alignments

  bioinformaticsgenomicslong-readstandem-repeats
  Language:Python 47

• yangao07 / TideHunter

  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

  long-readsseed-and-chainmultiple-sequence-alignmentpartial-order-alignmenttandem-repeats
  Language:C 24

• ChaissonLab / danbing-tk

  Toolkit for VNTR genotyping and repeat-pan genome graph construction

  genome-graphvntrgenotypinggraph-alignertandem-repeats
  Language:Python 20

• TravisWheelerLab / ULTRA

  ULTRA Locates Tandemly Repetitive Areas

  bioinformaticstandem-repeats
  Language:C++ 20

• Xinglab / TideHunter

  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

  tandem-repeatslong-readsseed-and-chainmultiple-sequence-alignmentpartial-order-alignmentnanopore-sequencing
  Language:C 17

• TimD1 / nPoRe

  nPoRe: n-Polymer Realigner for improved pileup-based variant calling

  alignmentcopy-number-variationgenomicslong-readsnanoporeont-datatandem-repeatsvariant-calling
  Language:Python 16

• Jong-hun-Park / trviz

  A python library for decomposing and visualizing tandem repeat sequences

  bioinformaticsgenomicssequence-alignmentstrtandem-repeatsvisualizationvntr
  Language:Python 8

• rezabehboudi / RPTRF

  RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences

  bioinformaticscomputational-biologytandem-repeatsalgorithmsngs-analysis
  Language:C++ 6

• XuewenWangUGA / USAT

  Universal STR Allele Toolkit (USAT) for viewing and comparison

  bioinformatics-analysissequence-analysistandem-repeats
  Language:Java 6

• acg-team / webSTR-API

  WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)

  apibioinformaticsgenomicstandem-repeats
  Language:Python 4

• dancooke / tandem

  A C++ tandem repeat finding library

  tandem-repeatsrepeatsstring-matching
  Language:C 4

• mary060196 / CISC5001_Research_Project_Implementing_TRed_Efficiently

  C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College

  tandem-repeatsedit-distancesuffix-arraybrooklyn-collegeindependent-studycisc-5001computer-science-departmentmultithreadinglandau-vishkincplusplus-11cpp11bioinformaticsbiological-sequencesdnarnaproteins
  Language:C++ 3

• jfjlaros / tssv

  Targeted characterisation of short structural variation.

  alignmentampliconcountingedit-distancelevenshteinprimerstandem-repeats
  Language:Python 2

• koeppl / distinct_squares

  Computing All Distinct Squares

  squarestandem-repeatscombinatorics
  Language:C++ 2

• ShawHahnLab / chiimp

  Computational, High-throughput Individual Identification through Microsatellite Profiling

  microsatellitesr-packageshort-tandem-repeatstandem-repeats
  Language:R 2

• avvaruakshay / looper

  Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.

  tandem-repeatsdna-sequencesmicrosatellitesdna-sequence-analysis
  Language:C++ 1

• hitbc / TideHunter

  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

  long-readstandem-repeatspartial-order-alignmentmultiple-sequence-alignmentnanopore-sequencing
  Language:C 1

• M-iyazaki / DNA_Repeated_Sequence_Detector

  This program can detect repeated sequences in DNA.

  dnasequencesequence-analysisdetectorpythonpython3jupyter-notebooktandem-repeatsdna-sequencesdna-sequencing
  Language:Jupyter Notebook 1

• matteodelucchi / CRC_TRs

  TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.

  bioinformatics-pipelinetandem-repeatscolon-cancer
  Language:Python 1

• petermchale / trfermikit

  Discover VNTR-associated DELs that are hard to find using Illumina reads

  tandem-repeatsillumina-sequencinggenomicsrare-variant-analysisrare-diseasesequence-alignmentwhole-genome-sequencingwhole-exome-sequencingstructural-variation
  Language:Jupyter Notebook 1

• ShawHahnLab / chiimp-paper

  Supporting code for the microsatellite genotyping paper introducing CHIIMP

  microsatellitesreproducible-researchshort-tandem-repeatstandem-repeats
  Language:Makefile 1

• M-iyazaki / DNA_Sequence_Detector

  This program can detect the already-known sequence in DNA.

  dnasequencesequence-analysisdetectorpythonpython3jupyter-notebooktandem-repeatsdna-sequencesdna-sequencing
  Language:Jupyter Notebook 0

• matteodelucchi / TRALResultAnalysis

  R package to get the most out of the results from TRAL

  bioinformatics-analysistandem-repeatscancer
  Language:R 0

• quintinm-dev / TandemRepeatDetection

  Implementation of a cool tandem repeat detection algorithm

  tandem-repeats
  Language:C++ 0

• rahimrajwani / MIRU-profiler

  mycobacterium-tuberculosis-complexwhole-genome-sequencingepidemiologytandem-repeats
  Language:Shell 0

• meghanamadineni / TandemRepeats

  Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.

  bioinformaticstandem-repeats
  Language:Java

• rashidalabri / awesome-repeat-dna

  🧬 A curated list of awesome resources for repeat DNA research

  awesometandem-repeatsshort-tandem-repeatsdnagenomics