There are 0 repository under tandem-repeats topic.
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Toolkit for VNTR genotyping and repeat-pan genome graph construction
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
A python library for decomposing and visualizing tandem repeat sequences
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
Universal STR Allele Toolkit (USAT) for viewing and comparison
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
Computational, High-throughput Individual Identification through Microsatellite Profiling
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
This program can detect repeated sequences in DNA.
TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.
Discover VNTR-associated DELs that are hard to find using Illumina reads
Supporting code for the microsatellite genotyping paper introducing CHIIMP
This program can detect the already-known sequence in DNA.
R package to get the most out of the results from TRAL
Implementation of a cool tandem repeat detection algorithm
Typing of Clostridioides difficile isolates using NGS data (reads and contigs) based on tandem repeat loci (TR6, TR10), and toxin genes (cdtA, cdtB, tcdA, tcdB, tcdC).
Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.
🧬 A curated list of awesome resources for repeat DNA research