caspargross

HybridAssembly

Nextflow pipeline for hybrid assembly combining short read (Illumina) and long read (Nanopore) data.

plasmIDent

Pipeline for identification of circular plasmids from genome assemblies and resistance gene annotation

expander

Identify and characterize repeat expansions in long read data

nf-core-denovohybrid

See the main fork of this repository here >>

athena

Minimalist static blog generator written in Python

barcoding

Lima - Demultiplex Barcoded PacBio Samples

BForest

bioconda-recipes

Conda recipes for the bioconda channel.

bionano-docker

Docker image for BioNano Access software

nanomod

Extract base modification informations from Fast5 files

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

Carousel

caspargross.github.io

Personal Landing Page

flair

Full-Length Alternative Isoform analysis of RNA

Flye

De novo assembler for single molecule sequencing reads using repeat graphs

hapdup

!FORK! container image: https://hub.docker.com/repository/docker/caspargross/hapdup

LandClimTools

R-Package to work with LandClim

luxpark

megSAP

a Medical Genetics Sequence Analysis Pipeline

methylartist

Tools for plotting methylation data in various ways

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

nanoplotter

Plotting functions of Oxford Nanopore sequencing data with adapted plotting themes.

nextflow

Fork: Runs with internal Proxy with HTTP_AUTH

ont_sv

Structural variant predicition with Nanopore reads

proteinView3D

RaGOO

Fast Reference-Guided Scaffolding of Genome Assembly Contigs

Sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

truvari

Structural variant comparison tool for VCFs

zonator

Utility tools for for anybody interested in using a familiar tool (R) in setting up Zonation runs and managing Zonation results.