Jason Stajich Lab at UC Riverside's repositories
Comparative_pipeline
Comparative genomics pipeline
PopGenomics_template
Template for Population Genomics variant calling
ElkDung_GenomeAnnotation
Annotate Elk Dung associated fungal genomes
RolshausenLab_Aspergillus_DatePalm
Aspergillus tubingensis DFA genome sequencing and annotation
Yugueros_cellwall_fungiphylogeny
Phylogenomic analysis for cell wall composition profiling
MATPredict
This repository is dedicated to the development of a tool that can predict MAT loci in fungi.
moss_mycobiome
Repository for all code related to moss biocrust mycobiome studies across an aridity gradient including AMF specific analyses and general fungal diversity.
Biocrust_fungi_hybrid_asm_annotation
Nanopore and illumina sequences for biocrust fungal isolates
Botrytis_sRNA_profile
Re-processing public sRNA data from Botrytis
Chytrid_Virus
Chytrid Virus finding
CIFAR_DeepUnderFungi_MG
Deep Underground Fungi Search
ExtremeRhodotorula_DraftGenomes
Draft genomes from short read data
KassonLab_Nectriaceae
Nectriaceae genomes project with Matt Kasson lab (WVU)
KassonLab_Verticillium
Verticillium genomes project with Matt Kasson lab (WVU)
Ncrassa_mutant_analyses
Analysis of 500+ Classic Mutants
PopGenomics_Afumigatus_Global
A. fumigatus population genomics 2021 relaunch
PopGenomics_Bd
Batrachochytrium dendrobatidis run
PopGenomics_Cimmitis
Population Genomics and CNV analysis of C. immitis strains
PopGenomics_Rhodotorula_mucilaginosa_NRRLY2510
Rhodotorula mucilaginosa population genomics with ref strain NRRL Y-2510
stajichlab.github.io
Stajich Lab Website
stajichlab.github.io-v2
lab site test
TaniaK_CF_Exophiala_dermatitidis
Archiving repo from paper.
Trebouxia_Schmitt
Duplication analysis
Y1000_orthologs
Compare and Build Orthogroups for Y1000 dataset and compare to YGOB