smangul1

rop

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

online.bioinformatics

good.software

This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.

MiCoP

MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.

UMI-Reducer

A computational tool for processing and differentiating PCR duplicates from biological duplicates

genomics.hoffman2

rna.seq.pipeline for hoffman2

data_reusability

reusability

error.correction.benchmarking

new EC

read.aligment.review

read.aligment.review

Microbe-scope

UNIX_SUMPh_Moldova

UNIX command like with Colaboratory - Google

djoin

DJoin

immuneCNV

CNV of V genes

Jacob.Ellison2

robustness_read_alignment

Robustness of the read alignment algorithms

seeing.beyond.target.results

results for running SBT on TCGA and OP datasets

SLRG

systematic library of reference genomes

building.microbial.genomics.resources

building.microbial.genomics.resources

CMR

CMR

genomicexpression.collaboration

gganatogram

Create anatograms using ggplot2

immune.specificity

scripts to compare kmers across phenotypes

Jacob.Ellison

collaboration with Jacob Ellison

MDD

new

miscellaneous.scripts

miscellaneous

my.presentations

my public presentations

resources

sbt

Seeing Beyond the Target (SBT) - computational protocol to process off target reads in WXS experiments

sbt_tool

test