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Center For Medical Genetics Ghent - Nextflow workflows (nf-cmgg)

Center For Medical Genetics Ghent - Nextflow workflows

nf-cmgg

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Center For Medical Genetics Ghent - Ghent University Hospital - Nextflow workflows

Location:Belgium

Home Page:www.cmgg.be

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Center For Medical Genetics Ghent - Nextflow workflows's repositories

exomecnv

A nextflow pipeline for calling exome CNVs

Language:NextflowLicense:MITStargazers:8Issues:0Issues:0

structural

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

Language:NextflowLicense:MITStargazers:6Issues:5Issues:48

germline

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

Language:NextflowLicense:MITStargazers:4Issues:3Issues:74

nextflow-beginner-feb-2024

The repository used at the Beginner Nextflow course in february 2024

Language:NextflowLicense:MITStargazers:4Issues:0Issues:0

preprocessing

Preprocessing workflow for sequencing data at CMGG

Language:NextflowLicense:MITStargazers:1Issues:0Issues:0

configs

Nextflow config files

License:MITStargazers:0Issues:0Issues:0

qdnaseq

A Nextflow pipeline to create qDNAseq bin annotations

Language:NextflowLicense:MITStargazers:0Issues:0Issues:0

sampletracking

CMGG Sampletracking workflow

Language:NextflowLicense:MITStargazers:0Issues:0Issues:0

test-datasets

Test datasets for unit tests with the nf-cmgg pipelines

License:MITStargazers:0Issues:3Issues:1

wisecondorx

A nextflow pipeline for creating references for WisecondorX

Language:NextflowLicense:MITStargazers:0Issues:2Issues:2