t-cell-receptor

There are 0 repository under t-cell-receptor topic.

milaboratory / mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
bioinformatics immunology antibody t-cell-receptor t-cell rep-seq 10x rna-seq sequencing single-cell
Language:Kotlin 377
awesome-vdj
slowkow / awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
bioinformatics immunology antibody t-cell-receptor hla-database hla-typing b-cell-receptor awesome-list hla bcr tcr vdj
233
mikessh / vdjtools
[Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data
bioinformatics immunology repertoire t-cell stat antibody t-cell-receptor rep-seq
Language:Groovy 141
mikessh / migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
bioinformatics ngs sequencing t-cell-receptor antibody immunology t-cell rep-seq
Language:Groovy 53
smangul1 / rop
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
rna-seq-analysis t-cell-receptor circrna repeats alu immunoglobulin
Language:Shell 36
mnielLab / NetTCR-2.2
Sequence-based prediction of peptide-TCR interactions using paired chain data
bioinformatics epitopes immunoinformatics immunology machine-learning t-cell-receptor
Language:Python 13
yutanagano / tidytcells
Standardise TR/MH/IG data
bioinformatics data-cleaning immunoinformatics immunology standardization t-cell-receptor major-histocompatibility-complex mh mhc tcr tr bioinformatics-tool antibody b-cell-receptor bcr ig immunoglobulin
Language:Python 8
tanghaibao / Splithunter
Identify split reads in given chromosomal regions
structural-variation t-cell-receptor age machine-learning
Language:C++ 5
bsml320 / DeepTR
Prediction and characterization of T cell response by improved T cell receptors to antigen specificity with interpretable deep learning
antigen deep-learning immunity t-cell-receptor t-cell-response
Language:Python 4
snaketron / ClustIRR
Clustering of immune receptor repertoires
b-cell-receptor bioinformatics clustering immunoinformatics immunology quantitative-methods rep-seq repertoire-analysis t-cell-receptor
Language:R 4
imminfo / ymir
(Under development) Computational framework for probabilistic models of immune receptor assembling.
bioinformatics ig immunoglobulin immunoinformatics immunology probabilistic-models statistical-immunoinformatics t-cell-receptor tcr vdj-recombination
Language:C++ 2
BioDataStudy / DeepTR
Prediction and characterization of T cell response by improved T cell receptors to antigen specificity with interpretable deep learning
deep-learning-algorithms immunity t-cell-receptor t-cell-response
Language:Python 1
jostmey / MaxSnippetModelOvarian
Statistical classifier for diagnosing ovarian cancer from immune repertoires
cancer immune-repertoires machine-learning multiple-instance-learning t-cell-receptor
Language:Python 1
RcwYuen / TCR-Embeddings
TCR embedding expressivity evaluation framework.
bioinformatics computational-biology computational-immunology expressivity t-cell-receptor
Language:Python 1
snaketron / IgStats
Suit of statistical procedures for robust quantification of various BCR and TCR repertoire properties
b-cell-receptor immune-rep immune-repertoire immune-repertoire-analysis immunoinformatics immunological-bioinformatics immunology t-cell-receptor
Language:R 1
vadimnazarov / tcr-specificity
T-cell receptor specificity prediction using Deep Learning
deep-learning immunology immunotherapy multi-omics t-cell-receptor
Language:Jupyter Notebook 1
ethanmclark1 / bioinformatics-sota-eval
Benchmarking modern neural networks for scRNA sequencing analysis
bioinformatics deep-learning eval gnn graph-neural-networks knowledge-primed kpnn pathway-guided pgnn pytorch scrna-seq sota t-cell-receptor tensorflow
Language:Python 0
fractaljc / Dissertation
MSc Bioinformatics with Systems Biology Dissertation
epitope-prediction-methods machine-learning-algorithms mutations t-cell-receptor virus zoonotic-disease
Language:Python 0
sguizard / nf-mixcr
A nextflow pipeline for TCR repertoire building with MiXCR
bioinformatics-pipeline mixcr nextflow nextflow-pipeline t-cell-receptor
Language:Nextflow 0
eisascience / Wong-Gold-Lewinsohn
TCR Enrichment Analysis (TEA) Webtool
t-cell t-cell-receptor enrichment-analysis visualization bioinformatics r mait trav1-2 computational-biology
Language:R
vadimnazarov / adversarial-mhc
Adversarial autoencoders for MHCI epitope and immunogenicity prediction
deep-learning generative-model mhc multi-omics t-cell-receptor
Language:Jupyter Notebook
vadimnazarov / shade-repertoire
Limitations of machine learning models for specificity prediction of T-cell receptor sequences
immune-repertoire immunology t-cell-receptor
Language:Jupyter Notebook