There are 0 repository under drop-seq topic.
A SingleCell RNASeq pre-processing snakemake workflow
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Bacon, W.A., Hamilton, R.S., Yu, Z., Kieckbusch, J., Hawkes, D., Krzak, A., Abell, C., Colucci, F. & Charnock-Jones, D.S. (2018) Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Front. Immunol., 9:2523 https://doi.org/10.3389/fimmu.2018.02523
Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)
Some of the mapping and normalization scripts used in our NCB paper PMID:31209294
Workflow for data analysis of DroNc-seq Data
adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data