amplicons

There are 0 repository under amplicons topic.

nextgenusfs / amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
amplicons microbiome mycobiome next-generation-sequencing fungi rdna coi lsu co1 mtco1
Language:Python 38
jonas-fuchs / varVAMP
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
illumina oxford-nanopore primer primer-design qpcr sanger multiplex-pcr pypi-package virus amplicons ampliconseq sequencing conda consensus-sequences container degenerate-primers easy-to-use pcr python3 primer-blast
Language:Python 36
AmpliconSuite / AmpliconClassifier
Classify output of AmpliconArchitect to detect types of focal amplifications present
amplicons python-library ampliconarchitect ecdna focal double-minutes bfb
Language:Python 18
biocorecrg / vectorQC
A pipeline for assembling and annotation of vectors
dnavectors amplicons dnaconstruct quality-control bioinformatics-pipeline
Language:Nextflow 5
cliu32 / athlates
exome-sequencing protocol amplicons illumina-platform
Language:Perl 5
erinyoung / ACI
Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.
amplicons bioinformatics coverage depth python3 samtools
Language:Python 3
DanielRCA / NCR-mtDNA_ampliconbasedngs
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
adna amplicon-sequencing amplicons ancient-dna ancient-dna-analysis ancientdna easy-to-use free haplogroup haplotype mitochondrial-genomes mt-dna mtdna next-generation-sequencing ngs ngs-pipeline
Language:Shell 2
MBeyens / pyAmpli
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
variant-filtration ngstools somatic-variants germline amplicons targeted-sequencing haloplex mips ngs genomics bioinformatics variants
Language:Python 1
AdamOss88 / Raw-to-Rawr-server
16s amplicons illumina its
Language:R 0
rosaak / Visualize_Taxa_Frequency
Visualizing taxa of different amplicon primer sets
microbiome python visualization seaborn matplotlib amplicons qiagen clc
Language:Jupyter Notebook