adna
There are 0 repository under adna topic.
- Language:Nextflow 154
- mapacheLanguage:Python 26
Integrative-Transcriptomics / DamageProfiler
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
Language:Java 17hringbauer / ancIBD
Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.
Language:Jupyter Notebook 10- Language:Nextflow 9
- Language:Java 8
- Language:R 7
- Language:HTML 5
paleobiotechnology / EMN001_Paleofuran
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
Language:Python 5CamilaDuitama / aKmerBroom
🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
Language:Python 4- Language:Python 3
nevrome / mobest.analysis.2022
Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest
Language:R 3- Language:R 3
zhangyi-he / WFM-1L-DiffusApprox-MLE
Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach
Language:R 3apeltzer / ClipAndMerge
The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.
Language:Java 2- Language:R 2
longg2 / LongBioinformatics
Scripts used by George S. Long
Language:Shell 1Estimating temporally variable selection intensity from ancient DNA data
Language:R 1Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations
Language:R 1Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis
Language:R 1Detecting and quantifying natural selection at two linked loci from time series data of allele frequencies with forward-in-time simulations
Language:R 1DanielRCA / MTDNA-CR
Raw code to get polymorphisms from samples analysed by using the PowerSeq® CRM Nested System kit (Promega Corporation)
Language:Shell 0A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
Language:Shell 0poseidon-framework / poseidon-schema
An archaeogenetic genotype data organisation file format
0Inferring the timing and strength of natural selection and gene migration in the evolution of chickens from ancient DNA data
Language:R 0ilight1542 / probegen
Pipeline for generation of fasta unique capture-probes from a set of genomes
Language:Python- Language:Haskell
- Language:Prolog
Website for a ~2h demonstration of Poseidon and some of its tools, features and components
Language:TeX
