linked-reads

There are 0 repository under linked-reads topic.

parklab / xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
transposable-elements linked-reads illumina nanopore pacbio mobile-element-insertion
Language:Python 87
bcgsc / tigmint
⛓ Correct misassemblies using linked AND long reads
misassembly-correction genome-scaffolding genome-assembly linked-reads 10xgenomics bioinformatics bioinformatics-tool
Language:Python 54
bcgsc / physlr
:chains: Construct a Physical Map from Linked Reads
genome-assembly genome-scaffolding linked-reads 10xgenomics bioinformatics bioinformatics-tool
Language:Python 17
bcgsc / chromeqc
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
genome genome-sequencing linked-reads quality-control
Language:HTML 15
bioinfologics / Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
dna-sequences genome-assembly dna-sequencing simulation simulator dna-assembly paired-end long-reads linked-reads
Language:Julia 13
morispi / LRez
Standalone tool and library allowing to work with barcoded linked-reads
barcode barcodes linked-reads linked reads 10x 10xgenomics 10x-genomics index haplotagging tell-seq stlfr bioinformatics
Language:C++ 12
pdimens / harpy
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
bioinformatics haplotype linked-reads pipeline sequencing variant-calling
Language:Python 9
pontushojer / awesome-linked-reads
Collection of tools and resources for linked-reads
awesome-list linked-reads 10x 10x-genomics stlfr haplotagging tell-seq dbs
9
morispi / LEVIATHAN
Linked-reads based structural variant caller with barcode indexing
linked-reads barcodes structural-variation svs 10xgenomics
Language:C++ 4
neutronstar
nf-core / neutronstar
De novo assembly pipeline for 10X linked-reads using Supernova
denovo-assembly genome-assembly linked-reads nf-core nextflow workflow pipeline 10xgenomics 10x-genomics supernova
Language:Nextflow 4
anne-gcd / MTG-Link
MTG-Link: Local assembly tool for linked-read data
bioinformatics gapfilling linked-reads barcodes assembly
Language:Python 3
RolandFaure / QuickDeconvolution
A software providing reference-free barcode deconvolution for linked reads data
bioinformatics linked-reads
Language:C++ 2
sjackman / tigmint-data
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
misassembly-correction genome-scaffolding genome-assembly linked-reads 10xgenomics bioinformatics bioinformatics-analysis
Language:Makefile 1
sjackman / tigmint-paper
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
misassembly-correction genome-scaffolding genome-assembly linked-reads 10xgenomics bioinformatics manuscript
Language:TeX
sjackman / tigmint-slides
Tigmint: Correct Misassemblies Using Linked Reads From Large Molecules
genome assembly misassembly-correction scaffolding 10x chromium linked-reads abyss gymnosperm mitochondrion
Language:JavaScript