pdb-database

There are 2 repositories under pdb-database topic.

Biswa96 / PDBDownloader
Standalone program to download PDB Symbol files for debugging without WDK
pdb pdb-files pdb-database windows c reverse-engineering reversing
Language:C 78
gu1729 / pdbdump
Dump content of PDB files (program databases) in JSON, XML, SQLite3, CSV etc.
code developer-tools code-quality windows pdb pdb-files pdb-database
Language:C++ 48
mdciao
gph82 / mdciao
mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data
molecular-dynamics computational-chemistry structural-biology python pdb-database amino-acids protein-structure gpcr gpcr-numbering kinases g-protein
Language:Python 36
johnnytam100 / pdb2uniprot
A Python script to map PDB ID + chain ID to UniProt ID.
bioinformatics bioinformatics-scripts bioinformatics-tool mapping pdb-database pdb-files pdb-structure rcsb uniprot uniprot-ids uniprotkb
Language:Python 17
project-gemmi / mmcif-benchmark
Benchmarks for reading and interpreting mmCIF files
mmcif benchmark pdb-database protein-structure
Language:Python 8
Utilon / MutaPipe_Repo
A bioinformatics pipeline to identify the best available PDB structures for all available variants for specified genes of interest
bioinformatics pdb-database clinvar pipeline mutations
Language:Python 5
Spenhouet / PDBViewer
Visualization of proteins directly from the PDB database or from a .pdb file.
protein-data-bank pdb pdb-files pdb-database protein 3d-viewer
Language:Java 4
multimeric / mmcifix
Fixes mmCIF protein structure files
bioinformatics structural-biology crystallography pdb-database mmcif
Language:Python 3
lucaspalmeira / bioinfo
Guia de programas e ferramentas de bioinformática e química computacional
alignment-algorithm bioinformatics drug-design genbank linux machine-learning molecular-dynamics molecular-modeling ncbi-blast pdb-database pymol python shell-script biopython
2
MooersLab / ACA2022
Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
aca colab-notebook molecular-graphics pdb-database protein-structure literate-programming cloud-computing pymol python ghosttext emacs vsc sublime-text vim
2
Guillawme / insights-from-the-pdb
Various statistics on the Protein Data Bank
pdb pdb-dataset pdbe-s-rest-api pdbe pdb-database
Language:HTML 1
QDcvd / DNA-Sequence-alignment
基于modeller官网脚本进行开发的序列比对脚本
modeller sequence-alignment pdb-files pdb-database protein-structure
Language:Python 1
QDcvd / Tripeptide-single-amino-acid-database-generator
A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete
protein python pdb-database pdb-files pdb-structure pymol modeller
Language:Python 1
Tejas1415 / PDB-Protein-Structure-Prediction
A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.
pdb pdb-parser pdb-database distance-matrix structures proteins prediction-model cnn-keras
Language:Python 1
WillyBruhn / PredictingProteinInteractions
neuronal-network pdb-database machine-learning
Language:R 1
YSChen0609 / PDB-Protein-Analysis
Modules for PDB Data parsing and Ramachandran Analysis.
pdb-database ramachandran-plot
Language:Python 1
guzikine / pdb-archive-filter
This script enables users to filter through PDB archive in order to obtain simple data from each file.
filter pdb pdb-database unix bash
Language:Perl 0
julianspaeth / pdb-viewer
A PDB Viewer Application implemented completely in JavaFX
pdb pdb-files pdb-database java javafx bioinformatics protein
Language:Java
madsondeluna / pdb_explorer
PDB Explorer analyzes the Protein Data Bank through automated API queries, extracting key statistics including experimental methodologies, source and expression organisms, structural resolution, and classification data. Generates organized datasets in JSON and CSV formats.
api-rest pdb-database requests-python
Language:Jupyter Notebook
ravila4 / Pharos-to-PDB
Mapping Pharos Targets to PDB IDs
pdb-database protein-structure
Language:Jupyter Notebook
UWSEDS-aut17 / OPMxplore
uwseds-group-OPMxplore created by GitHub Classroom
membrane-proteins pdb pdb-database
Language:Jupyter Notebook

pdb-database

Biswa96 / PDBDownloader

gu1729 / pdbdump

gph82 / mdciao

johnnytam100 / pdb2uniprot

project-gemmi / mmcif-benchmark

Utilon / MutaPipe_Repo

Spenhouet / PDBViewer

multimeric / mmcifix

lucaspalmeira / bioinfo

MooersLab / ACA2022

Guillawme / insights-from-the-pdb

QDcvd / DNA-Sequence-alignment

QDcvd / Tripeptide-single-amino-acid-database-generator

Tejas1415 / PDB-Protein-Structure-Prediction

WillyBruhn / PredictingProteinInteractions

YSChen0609 / PDB-Protein-Analysis

guzikine / pdb-archive-filter

julianspaeth / pdb-viewer

madsondeluna / pdb_explorer

ravila4 / Pharos-to-PDB

UWSEDS-aut17 / OPMxplore