massie

octave-nn

Octave code for Artificial Neural Networks

chipper

Fast proteasomal cleavage detection. Apache-licensed.

notebooks

Repo to hold Jupyter notebooks

avrotuples

Avro Scala helper classes: AvroTuple[1-22]

adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

alternativefax

avro-scala-compiler-plugin

Automatically exported from code.google.com/p/avro-scala-compiler-plugin

nci_design

covid-19

A collection of work related to COVID-19

avocado

A Variant Caller, Distributed

avro

Mirror of Apache Avro

bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

bdg-services

Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.

bdg-utils

General (non-omics) code used across BDG products. Apache 2 licensed.

eggo

Ready-to-go Parquet-formatted public 'omics datasets

GAParquet

Integrating ADAM/Parquet with GATK

gastore

Sample code to inform a discussion around content-addressable storage

gatk

GATK4 development

gnocchi

labs

Scripts for the PH525x: Data Analysis for Genomics

massie.github.io

Public web site

nn

Experimenting with neural networks

OptiType

Precision HLA typing from next-generation sequencing data

orthic

Orthic shorthand resources

parquet-format

Mirror of Apache Parquet

parquet-mr

Mirror of Apache Parquet

schemas

spark

Mirror of Apache Spark

spark-parquet-shuffle

Code for reading/writing Spark shuffle as Parquet files

ucdaviswineauction