needleman-wunsch-algorithm

There are 3 repositories under needleman-wunsch-algorithm topic.

• poke1024 / pyalign

  Fast and Versatile Alignments for Python

  bioinformaticsgotoh-algorithmneedleman-wunsch-algorithmsmith-waterman-algorithmdigital-humanitiesalignment
  Language:C++ 50

• mmtechslv / nwunch

  Implementation of Needleman-Wunsch algorithm in Python Using Nested Functions.

  alignmentalignment-algorithmbioinformaticsdemoneedleman-wunschneedleman-wunsch-algorithmpythonsequence-alignment
  Language:Python 13

• blievrouw / needleman-wunsch

  Demo of Needleman-Wunsch algorithm

  demoneedleman-wunsch-algorithmreactjs
  Language:HTML 7

• DulanDias / DNA-Sequence-Alignment

  DNA Sequence Alignment with Dynamic Programming Implementation using the Needleman-Wunsch Algorithm and Smith-Waterman Algorithm.

  javasequence-alignmentdna-sequencesdnacomputational-biologybioinformaticsdynamic-programmingneedleman-wunschneedleman-wunsch-algorithmsmith-watermansmithsmith-waterman-algorithm
  Language:Java 7

• zumrudu-anka / cpp-openmp-needleman-wunsch

  :microscope: :checkered_flag: Comparison of DNA Sequences

  needleman-wunsch-algorithmneedleman-wunschneedlemanwunschopenmpcpp
  Language:C++ 6

• kaiweiang / Needleman-Wunsch-Algorithm

  A global alignment algorithm used in bioinformatics to align protein of nucleotide sequences

  needleman-wunsch-algorithmbioinformaticsglobal-alignment-algorithmdna-sequencesmatlab
  Language:MATLAB 4

• mgfzemor / Pairwise-sequence-Aligment-Tool

  Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

  amino-acidsglobal-alignmentlocal-alignmentneedleman-wunsch-algorithmneedleman-wunshpairwiseproteinssequence-alignmentsmith-watermansmith-waterman-alignment
  Language:HTML 4

• Enescigdem / SequenceAlignment

  Global and Local Sequence Alignment

  needleman-wunschneedleman-wunsch-algorithmsmith-watermansmith-waterman-alignmentglobal-alignmentlocal-alignmentbioinformatics
  Language:Python 3
• IsoAligner

  JacobHanimann / IsoAligner

  IsoAligner: dynamic mapping of amino acid positions across protein isoforms

  bioinformaticssequence-alignmentsequence-to-sequenceamino-acid-sequenceaminoacidprotein-sequencesuniprot-idsrefsequcscexon-mappingprotein-idsneedleman-wunsch-algorithmaminoacid-positionprotein-isoformsplice-variantsalternative-splicing
  Language:Python 3

• MohdFarag / Bioinformatics-Sequence-Alignment

  GUI for software that can do global pairwise, local pairwise, multiple sequence Alignment.

  bioinformaticsfletneedleman-wunsch-algorithmpythonsequence-alignment
  Language:Python 3

• Oprishri / Bioinformatics-algorithms-

  Needleman and wunch algorithm

  needleman-wunsch-algorithmmodifiedneedlemansmithwatermanalgorithm
  Language:Jupyter Notebook 3

• poke1024 / simileco

  A header-only templated C++17-library for fast and versatile sequence alignment computations.

  sequence-alignmentneedleman-wunsch-algorithmsmith-waterman-algorithmsmith-waterman-alignment
  Language:C++ 3

• shivChitinous / seq-al

  aligning DNA and protein sequences using dynamic programming

  affine-gap-penaltieslinear-gap-penaltiessmith-waterman-algorithmprotein-sequencessequence-alignmentneedleman-wunsch-algorithm
  Language:Jupyter Notebook 3

• AjayBadrinath / DAA-Algo-Implementations

  Implementations of DAA Algorithms in various languages

  algorithmant-colony-optimizationcdistance-vector-routinggenetic-algorithmjavalink-state-routingneedleman-wunsch-algorithmparticle-swarm-optimizationpythonrouting-algorithmsequence-alignmenttravelling-salesman-problemcultural-evolution
  Language:Java 2

• CharliesCodes / bioinformatics

  A compilation of all the programs in my bioinformatics course

  bioinformaticssequence-alignmentlocal-alignmentglobal-alignmentsmith-waterman-algorithmneedleman-wunsch-algorithmsemiglobalmatchingsemiglobalfree-shift-alignmentde-novo-assemblymapping-assemblypattern-matchingudemyudemy-course
  Language:Python 2

• egotist0 / Gene-Factory

  A visual biology tool widget that can be used for string proximity matching, nucleic acid sequence generation at specified ratios, and match evaluation

  needleman-wunsch-algorithmpythontinker
  Language:Python 2

• Howeng98 / Smith_Waterman_parallel

  Implement parallel Smith Waterman algorithm on CUDA

  cudacuda-programmingneedleman-wunschneedleman-wunsch-algorithmparallel-programmingsmith-watermansmith-waterman-algorithmsmith-waterman-alignment
  Language:Cuda 2

• mutalibcs / Bio-informatics

  Bio informatics course materials for NEUB students.

  edit-distance-algorithmneedleman-wunsch-algorithmneubsmith-waterman-algorithmdna-transcriptionpdppartial-digest-problembio-informaticsbioinformaticsbioinformatics-algorithmsalgorithmedit-distanceedit-distance-algorithm-implementationedit-distance-algorithmsneedleman-wunschneedleman-wunsch-alignmentneedleman-algorithm
  Language:C++ 2

• priyanshu-lanjewar / DNA-Sequence-Alignment-App

  dnadna-sequencesdna-sequence-alignmentneedleman-wunsch-algorithmdynamic-programmingbioinformaticsoptimal-matching
  Language:Kotlin 2

• PSNAppz / Needleman-Wunsch

  Simple Needleman Wunsch Algorithm in C

  cneedleman-wunschneedleman-wunsch-algorithmbioinformaticspsnappzglobal-alignmentglobal-alignment-algorithmhacktoberfest
  Language:C 2

• alimz758 / Sequence-Alignment---Bio-informatics

  Global and local DNA sequence alignment

  sequence-alignmenthirschbergneedleman-wunsch-algorithmlocal-alignmentsglobal-alignment
  Language:Python 1

• alperencubuk / sequence-alignment-with-nw-algorithm

  Implementation of Needleman–Wunsch algorithm. Compare sequences (in fasta files) and list max scored sequences. Multithreaded with OpenMP.

  cneedleman-wunsch-algorithmopenmpmultithreading
  Language:C 1

• duartebred / Algoritmos-Analise-Sequencias-Biologicas

  Repositório para apresentação de código desenvolvido pelo grupo 3 para a UC Algoritmos para Análise Sequências Biológicas do Mestrado em Bioinformática, ano lectivo 23-24.

  alignment-algorithmblastdynamic-programmingmotifsneedleman-wunsch-algorithmorfsphylogenetic-analysisrecursion-algorithmstring-manipulationtranslation
  Language:Jupyter Notebook 1

• giamuhammad / needleman-wunsch_global_alignment

  Global Alignment for DNA/RNA/Protein Sequence. Needleman-Wunsch Algorithm. An Implementation in Web with Python and Flask Back-end

  bioinformaticsalignmentsequence-alignmentdna-sequencesglobal-alignmentneedleman-wunsch-algorithm
  Language:Python 1

• Kok-Herng / amino-acid-sequence-alignment

  Program to determine the similarity of two amino acid sequences

  amino-acid-sequencedynamic-programmingneedleman-wunsch-algorithmsequence-alignmentbioinformatics
  Language:C++ 1

• krmc-pandacorn / sequence-alignment

  Sequence alignment utilities for bioinformatics applications

  global-alignmentneedleman-wunsch-algorithmsequence-alignment
  Language:Jupyter Notebook 1

• m-walid / Bioinformatics-Alignment-Algorithms

  algorithmsbioinformaticsdot-matrixneedleman-wunschneedleman-wunsch-algorithmsmith-watermansmith-waterman-alignment
  Language:JavaScript 1

• Nikhil190804 / IQB-Assignments

  This is the repository for the IQB (Introduction to Quantitative Biology) Assignments. We had to use python to solve the questions.

  bioinformaticschou-fasmanglobal-alignment-algorithmneedleman-wunsch-algorithmpython
  Language:Python 1

• OmarMDiab / Bioinformatics-Needle_man-And-Affine_Gap

  Implementation of Needleman and Affine Gap Bioinformatics Algorithms 🧬

  bioinformaticsdynamic-programmingneedleman-wunsch-algorithmaffine-gap-algorithm
  Language:Jupyter Notebook 1

• rameziophobia / bioinformatics-algorithms

  implementation and visualizations for sequence alignment algorithms

  algorithmsalignmentbioinformaticsdot-plotneedlemanneedleman-wunschneedleman-wunsch-algorithmreactreactjssmith-watermansmith-waterman-alignment
  Language:JavaScript 1

• saminheydarian / NLP_Course_2021

  NLP Course | Home Works | Fall 2021 | Dr. Behrooz Minaei

  bertcolastsbsst2text-generationpos-tagginghmmcky-algorithminformation-retrievalpcfglevenshtein-distanceneedleman-wunsch-algorithmgenerative-vs-discriminative-modelnaive-bayes-classifieradd-one-smoothingimdbregular-expressionlanguage-modelregexbigram-model
  Language:Jupyter Notebook 1
• alignment-web-app

  vanleiko / alignment-web-app

  Web App para alinhamento de sequências de DNA

  alinhamento-globalalinhamento-localsmith-waterman-alignmentneedleman-wunsch-algorithmalign-dna-sequencespythonstreamlitwebapp
  1

• tsoomo446 / bioinformatic

  Next.js project implementing bioinformatics algorithms, including Needleman-Wunsch and Smith-Waterman, for sequence alignment with a modern web interface. ICSI310 ,Introduction to Bioinformatics

  bioinformaticsneedleman-wunsch-algorithmnextjssmith-waterman-algorithmuniversity-course-project
  Language:TypeScript 0

• joyou159 / Pairwise-Sequence-Alignment

  This repository provides implementations for basic sequence alignment techniques, focusing on two popular methods: Dot Plot and Needleman-Wunsch algorithm.

  bioinformaticsdot-plotneedleman-wunsch-algorithmpairwise-alignmentsequence-alignment-visualization
  Language:Python

• leila-kasmi-lk150 / SequenceAlignment

  Implementation of Sequence Alignment using Needleman-Wunsch and Smith-Waterman algorithms with fixed scoring values.

  java-swingneedleman-wunsch-algorithmsequence-alignmentsmith-waterman-alignment
  Language:Java

• vncsmnl / needleman-wunsch

  🧬 This project implements the Needleman-Wunsch algorithm for global sequence alignment.

  dynamic-programmingglobal-alignmentneedleman-wunschneedleman-wunsch-algorithmneedleman-wunsch-alignmentpairwise-alignmentpythonpython3portfolio
  Language:Python