mrna

There are 2 repositories under mrna topic.

• hyeshik / tailseeker

  Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

  transcriptomerna-seqsnakemakemolecular-biologymrnapolya-tailpipeline
  Language:C 19
• pseudoU-BIDseq

  y9c / pseudoU-BIDseq

  🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)

  rnapseudouridinemodificationsingle-basemrnarrnaepitranscriptomeepitranscriptomics
  Language:Python 11
• NACHO

  mcanouil / NACHO

  NAnostring quality Control dasHbOard

  nanostringshinyquality-controlnormalisationr-packager-statsrstatsmirnamrna
  Language:R 7

• omics-datascience / modulector

  An open platform which provides information about miRNAs and genes from different popular databases

  multiomixgene-expressionmirna-mrna-interactionmrnamirnamethylationpubmed
  Language:Python 6

• memr5 / OpenVaccine-COVID-19-mRNA-Vaccine-Degradation-Prediction

  Urgent need to bring the COVID-19 vaccine to mass production.

  mrnacovid-19vaccinedeep-learningkaggle-competition
  Language:Jupyter Notebook 5

• Rav4s / DNA_transcription_translation

  A simple, fast program which transcribes a DNA strand into messenger RNA (mRNA), which it then translates into amino acids.

  dnadna-sequencestranscriptiontranslationamino-acidsrnabiologydna-stranddna-transcription-translationmessenger-rnatranslatesmrna
  Language:Python 5

• 01-vyom / mRNA-Vaccine-Degradation-Prediction

  mRNA Vaccine Degradation Prediction using Deep Learning

  mrnaprediction-modelkaggle-competitionkaggle-datasetkaggledeep-learningmachine-learningvaccinecovid-19lstm
  Language:Python 4

• Nico-Curti / DNetPRO

  Discriminant Analysis with Network PROcessing

  combinatorial-optimizationfeature-selectionmicroarray-datamrnanetwork-analysis
  Language:Python 3

• Rav4s / Rust_DNA_transcription_translation

  A simple, fast program which transcribes a DNA strand into messenger RNA (mRNA), which it then translates into amino acids, implemented in Rust.

  aminoamino-acidsdnadna-strandmessenger-rnamrnarnarustsequencesstrandtranscriptiontranslation
  Language:Rust 3

• zhangjunpeng411 / MSLCRN

  MSLCRN: a novel step-wise method for inferring module-specific lncRNA-mRNA causal regulatory network in human cancer

  lncrnamrnahuman-cancerregulatory-network
  Language:R 3

• TreesLab / circRNA_ASD

  Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism

  circrnamicrornamrnaautism
  Language:R 2

• chenchenxiong / ASDmiR

  ASDmiR: a step-wise method to uncover miRNA regulation related to autism spectrum disorder

  mirnamrnalncrnamirna-spongeautism-spectrum-disorder
  Language:Emacs Lisp 1

• deargen / DearCascadedWx

  Public codes for Cascaded Wx algorithm to select genes relative with patients survivals.

  neural-networkfeature-selectionmrnatcgacancer-genomicscancer-prognosis
  Language:Python 1

• elekt / dna-project

  Simulation of DNA expression to proteins from any given or gererated DNA sequence

  dnaexpressionmrnageneticsgenom
  Language:Python 1

• FerasDA / vaccine-doses

  A tool to show the recommended date for the second dose of the mRNA COVID-19 Vaccines.

  covid-19covid19mrnavaccines
  Language:JavaScript 1

• icatrina / PinMol_Mac

  molecular-beaconmrnalive-cell-imaging
  Language:Python 1

• nathakits / streamlit-sars-cov2

  SARS-CoV-2 analysis using BioPython

  streamlitbiopythonmrnadnacovid-19
  Language:Python 1

• Xyaneon / Mutation-Detector

  Homework 2 for MCS 5603 Intro to Bioinformatics. Written in Python.

  amino-acid-sequencebioinformaticscomparisondnafastamrnamutationspython
  Language:Python 1

• zhangjunpeng411 / SpongeModule

  In silico methods for predicting miRNA sponge modules

  mirnacernamirna-spongelncrnamrnapseudogenepancancermirna-sponge-modulescerna-modules
  Language:MATLAB 1

• Ding-RNA-Lab / Sfold

  SFold RNA tools

  mirna-mrna-interactionmrnamirna-bindingmrna-structure
  Language:Perl 0

• gullskatten / vacci

  Informational website about mrna-vaccines (ELI5)

  mrnavaccinewebsitecoronacoronavirus
  Language:TypeScript 0

• ManinderpreetPuri / Bioinformatics-Neucleotide-translation-transcription

  This project is to read a fasta file and read the nucleotide bases. Then translate it to mRNA and then to a protein sequence. Python code is used for the translation and transcription of sequences.

  pythongooglecolabcolab-notebookcolaboratorycolabbioinformaticstranslationtranscriptionneucleotidemrna
  Language:Jupyter Notebook 0

• setten-QB / R-STEINER

  bioinformaticsprotein-productiontranslation-efficiencymachine-learningmrna
  Language:Python 0
• UV_collab_genistein

  gloknar / UV_collab_genistein

  Repositorio de archivos necesarios para la colaboración con Drs. Gambini y Strømsnes sobre genisteína y miRNAs

  mirnagenisteinbioinformaticsmrna
  Language:HTML

• karthik-d / rna-protein-autoencoder

  Prediction of surface protein expression from mRNA expression using a regression auto-encoder neural network.

  autoencoderautoencoder-neural-networkcite-seqmrnaprotein-expressionpytorchsingle-cell-analysistorchfine-tuningprotein-rna-interactionsregression-model
  Language:Python

• okadalabipr / Chiang2020

  Chiang, S., Shinohara, H., Huang, J. H., Tsai, H. K. & Okada, M. Inferring the transcriptional regulatory mechanism of signal-dependent gene expression via an integrative computational approach. FEBS Lett. (2020).

  csystems-biologytranscription-factorsmrnacomputational-biologygene-regulatory-network
  Language:C

• Thom-J-H / Stabell-Benn_et-alia

  This project explores the results presented in Stabell-Benn, et alia, "Do Adenovirus-Vector Vaccines Have Beneficial Non-Specific Effects?" (5 April 2022) @ at SSRN: https://ssrn.com/abstract=4072489 or @ http://dx.doi.org/10.2139/ssrn.4072489

  covid-19mrnarrelative-risktidyverseadenovirusbeneficial-non-specific-effects
  Language:R

• ttsalpha / stanford-covid-vaccine

  OpenVaccine: COVID-19 mRNA Vaccine Degradation Prediction

  covid-19mrnavaccine
  Language:Jupyter Notebook