denovo
There are 0 repository under denovo topic.
topazape / LSTM_Chem
Implementation of the paper - Generative Recurrent Networks for De Novo Drug Design.
Language:Jupyter Notebook 116sirius-ms / sirius
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Language:Java 77alexarnimueller / LSTM_peptides
Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
Language:Python 67Shamir-Lab / Recycler
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
Language:Python 58- Language:Nextflow 54
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
Language:Java 51sarisabban / RamaNet
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
Language:Python 47Implementation of the paper - Automatic chemical design using a data-driven continuous representation of molecules
Language:Python 42- HAT
TNTurnerLab / HAT
HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
Language:Python 23 - Language:Java 14
A bare metal Python library for building and manipulating protein molecular structures
Language:Python 11- Language:C++ 8
nf-core / denovohybrid
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
Language:Nextflow 8- acorn
acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.
Language:R 6 A de novo variant caller leveraging Parabricks GPU accelerated variant calling
Language:Python 6HARE is the GPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
Language:Shell 4Tortoise is the CPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
Language:Python 4hms-dbmi / RaMeDiES
Statistical models for finding de novo recurrence and compound heterozygosity across rare disease patient cohorts
Language:Python 3BerkeCagkanToptas / VBT-TrioAnalysis
A fast and accurate tool that identifies Mendelian violations in family trios. Resolve variant representation issues in VCF files
Language:C++ 2- Language:Python 2
- Language:HTML 1
Nkts007 / Research-Project
This repository holds the code and notes during the use of Casanovo as part of my Research Project, as well as links to resources used as part of the Metaproteomic Analysis of my samples.
Language:Jupyter Notebook 10-Ioniel-0 / guppy_MR
Repository for scripts used to estimate guppy (Poecilia reticulata) mutation rate.
Language:Python 0- Language:Python 0
parthian-sterlet / mcot-kernel
Detection of motifs co-occurrence in a single ChIP-seq dataset
Language:C++ 0- Language:Java
