stochastic-simulations

There are 1 repository under stochastic-simulations topic.

• SciML / FiniteStateProjection.jl

  Finite State Projection algorithms for chemical reaction networks

  chemical-reaction-networksfinite-state-projectionbiological-modelingjulia-packagesystems-biologystochastic-simulationsgillespie-algorithmgene-network
  Language:Julia 20
• cayenne

  quantumbrake / cayenne

  Python package for stochastic simulations

  gillespiestochastic-simulationssimulationalgorithmstochasticpythoncython
  Language:Python 17

• achattaraj / Ksp_phase_separation

  Tools for data generation and data analysis for the eLife research article - "The solubility product extends the buffering concept to heterotypic biomolecular condensates"

  biomolecular-simulationbionetgenbiophysicscomputational-biologyspringsaladstochastic-simulations
  Language:Python 2

• marcoxa / Jillespie

  A Julia implementation of Gillespie's algorithm(s).

  juliasimulationstochastic-simulations
  Language:Julia 1

• mcavallaro / gLoop

  Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5

  flow-cytometry-datapymcmcmcgenome-analysisstochastic-simulations
  Language:R 1

• Gdemaude / ASFVModel

  Numba accelerated and multiprocess simulation of propagation of the African Swine Fever Virus

  asfvepidemic-simulationsnumbastochastic-simulationsmultiprocessing
  Language:Python 0

• lillux / gillespie_ssa

  Implementation of Gillespie Stochastic Simulation Algorithm

  biochemistrybioinformaticsbiological-simulationscheminformaticschemistrygillespiegillespie-algorithmreactionssimulationstochastic-processesstochastic-simulation-algorithmstochastic-simulationsbiological-noiseschlogl
  Language:Jupyter Notebook 0

• mauricelanghinrichs / StatsInferenceTutorial

  Tutorial for Statistical Inference with Julia.

  bayesian-inferencedifferential-equationsjuliaperformanceprobabilistic-programmingstatistical-inferencestochastic-simulations
  Language:HTML 0
• TA_I_paper

  Q-bio-Belgrade / TA_I_paper

  Code for the paper "Bistability in Type I Toxin-Antitoxin Systems May Lead to Stress-Induced Persister Formation" by Sofija Markovic, Magdalena Djordjevic, Hong-Yu OU, and Marko Djordjevic.

  bacteriabifurcationsbistabilitynonlinear-dynamicspersistencestochastic-simulationstoxin-antitoxin
  Language:MATLAB 0
• Stochastic-Simulations

  rafael-a-monteiro-math / Stochastic-Simulations

  A glimpse of some stochastic simulation methods. I don't claim originality for the results posted here: these are mostly some quick experiments I did while doing research.

  stochastic-simulationsgenetic-algorithmlasso-regressionsimulated-annealingconvolutional-neural-networks
  Language:HTML 0

• rouzbeh / Modigliani

  Modigliani is a stochastic simulation framework for neuroscientists

  stochastic-simulationsneuroscienceneuronssimulation-frameworkbiology
  Language:C++ 0

• ruosengao / MScProject

  elliptic-pdesstochastic-simulationsmonte-carlo-simulationsbrownian-motions
  Language:Python 0

• WalterNadalin / Reaction-DiffusionProcesses

  An implementation of a pratical guide to stochastic simulations of reaction-diffusion processes

  reaction-diffusionstochastic-simulations
  Language:Rust 0

• AdrianGuel / StochasticProcesses

  Simulation and kernel density estimation of linear and non-linear stochastic systems. Some codes include the computation of the information rate, KL-divergence and information length.

  stochastic-processesstochastic-simulationsinformation-length
  Language:Jupyter Notebook