stochastic-reaction-networks

There are 0 repository under stochastic-reaction-networks topic.

• hammouc / Multilevel-Monte-Carlo-with-Importance-Sampling-for-SRNs

  This repository includes Matlab codes/routines that were used in our manuscript entitled "Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks" that can be found in this preprint: https://arxiv.org/abs/1911.06286

  multilevel-modelsmultilevelmultilevel-monte-carloimportance-samplingbiological-networksbiological-simulationsmatlabstochastic-simulation-algorithmstochastic-reaction-networksstochastic-biological-systemsmonte-carlo-methodsnumerical-analysisnumerical-simulationsstochastic-process
  Language:MATLAB 11

• voduchuy / NumCME.jl

  Direct solution of the Chemical Master Equation in Julia.

  chemical-master-equationfinite-state-projectionstochastic-reaction-networksnumerical-analysis
  Language:Julia 8

• voduchuy / pypacmensl

  Python wrapper for PACMENSL.

  stochastistochastic-reaction-networkschemical-master-equationparallel-computingmpipetsccython
  Language:Cython 3

• voduchuy / pacmensl

  Library for parallel direct solution of the Chemical Master Equation (CME).

  stochastic-reaction-networkschemical-master-equationparallel-computingmpipetscnumerical-analysissundialsparallel
  Language:C++ 1

• voduchuy / StMcmcCme

  This repository contains the Python modules and scripts to reproduce the results in the paper "Catanach, Vo, Munsky. IJUQ 2020."

  sequential-monte-carlostochastic-reaction-networksmarkov-chain-monte-carlomultifidelitybayesian-inferencemcmcbayesianinferencechemical-master-equationsingle-cell-imagingsmfish
  Language:Jupyter Notebook 1

• voduchuy / CudaFsp

  CUDA-based implementation of the Finite State Projection (FSP) algorithm.

  cudachemical-master-equationstochastic-reaction-networkssundials
  Language:Cuda 0

• voduchuy / Kalb_Vo_2021

  This repository contains the code used for the data modeling and analysis presented in Kalb, Vo et al. Scientific Reports 11, 2021.

  stochastic-reaction-networksinflammationtranscription
  Language:Jupyter Notebook 0

• voduchuy / KrylovFspSsa

  Fortran implementation of the Krylov-FSP-SSA algorithm for solving the Chemical Master Equation.

  stochastic-reaction-networkschemical-master-equationnumerical-methodsstochastic-simulation-algorithmgillespie-algorithmkrylov-subspace-approximation
  Language:Fortran

• voduchuy / Vo_2019_ADAMHFSP

  Code to reproduce the numerical results in the manuscript, "Bayesian estimation of stochastic gene expression using multifidelity models "Huy D. Vo*, Zachary R. Fox, Ania A. Baetica, Brian E. Munsky.

  mcmcchemical-master-equationstochastic-reaction-networksmodel-reductiondelayed-acceptancematlab
  Language:MATLAB