gene-network

There are 0 repository under gene-network topic.

augustinas1 / MomentClosure.jl
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
systems-biology chemical-reaction-networks stochastic-processes moments moment-closure moment-equations gillespie-algorithm gene-network
Language:Julia 44
jyyulab / SJARACNe
Scalable Tool for Gene Network Reverse Engineering
gene-network inference mutual-information
Language:C++ 21
ZJUFanLab / scRank
A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data
cell-type-prioritization drug-response gene-network manifold-learning single-cell
Language:R 20
SciML / FiniteStateProjection.jl
Finite State Projection algorithms for chemical reaction networks
chemical-reaction-networks finite-state-projection biological-modeling julia-package systems-biology stochastic-simulations gillespie-algorithm gene-network
Language:Julia 18
xiaomingfu2013 / DelaySSAToolkit.jl
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
systems-biology chemical-reaction-networks stochastic-process gene-network gillespie-algorithm stochastic-simulation-algorithm delay-systems
Language:Julia 15
scastlara / ppaxe
Text mining tool to retrieve protein-protein interactions from the scientific literature.
bioinformatics text-mining protein-protein-interaction gene-network nlp machine-learning
Language:Python 12
connerlambden / Cube
Intuitive Nonparametric Gene Network Search Algorithm
gene-relationships scanpy network-analysis single-cell-rna-seq gene-network
Language:Python 3
DanShai / Genome
Genome Network Ala Neural Network
classification gene-network genetic-programming genome kernels network neural-network optimization regression tsne
Language:Python 3
fran-romero-campero / BRC1NET
A web based app developed using the R package shiny to explore the transcriptional network downstream from the Arabidopsis thaliana transcriptional factor BRC1.
arabidopsis-thaliana gene-network plant-development shiny-apps systems-biology
Language:R 3
mims-harvard / ngmc
Network-guided matrix completion
gene-network matrix-completion heterogeneous-network
Language:Python 3
fran-romero-campero / ATTRACTOR
Arabidopsis Thaliana TRanscriptionAl Circadian neTwORk, a web based tool developed using the R package shiny for the exploration and analysis of a transcriptional network in Arabidopsis thaliana constituted by circadian and light responsive transcriptional factors and regulators
shiny-apps gene-network systems-biology bioinformatics arabidopsis-thaliana circadian
Language:R 2
aureliolfdez / pyengnet
pyEnGNet: optimized reconstruction of gene co-expression networks using multi-GPU
big-data bioinformatics ensemble high-performance-computing system-biology gene-network
Language:Cuda 1
JBris / dream5_grn_data
Gold standard gene regulatory network data from the DREAM5 challenge.
gene-network gene-network-inference gene-network-reconstruction gene-regulatory-network gene-regulatory-network-inference genomics network
1
scastlara / RPGeNet
Retinitis Pigmentosa gene interaction network website.
gene-network protein-protein-interaction rare-disease retina neo4j
Language:JavaScript 1
spencer-hs / Gene-Expression-Networks-3-Brain-Region-R
Construction of Gene Expression Network across 3 brain regions in the presence of Ethanol using WGCNA in R
r gene-network neural-networks brain-regions wgcna mice annotation-data network-construction
Language:R 1
tmichoel / BioFindr.jl
Fast Inference of Biological Networks from Directed Regulations (Findr) in Julia
bioinformatics causal-inference computational-biology gene-network gene-network-inference julia statistical-genetics biojulia gene-expression genomics multi-omics
Language:Julia 1
emosca-cnr / MOSUB
Network-based analysis of omics with multi-objective optimization
gene-network multi-omics multi-objective-optimization
Language:R 0
mariadsn / CyEnGNet-APP
The CyEnGNet-App is a plugin for Cytoscape. It implements the EnGNet algorithm, a powerful network analysis method. This app allows users to directly generate the output network in Cytoscape.
bioinformatics cytoscape gene-network
Language:Java 0
studyfranco / GNEA
In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.
gene-network rna-seq rna-seq-analysis rna-seq-pipeline sc-rna-seq
Language:R 0
th789 / fflmediation
R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
gene-interaction-networks gene-network mediation-analysis mirna-seq mrna-seq transcription-factors gene-expression gene-regulation gene-regulatory-network
Language:R 0
johndef64 / bertopic_graph
This repo offers a workflow dedicated to utilizing BERTopic for Semantic Graph-based information retrieval in nutrigenomicsIt includes Jupyter notebooks on topic modeling and semantic graph creation, aimed at enhance genetic literature exploration. Ideal for genomic researchers, it simplifies the analysis of nutrition-related genetic information.
natural-language-processing topicmodeling gene-network genomics knowledge-graph
Language:Jupyter Notebook

gene-network

augustinas1 / MomentClosure.jl

jyyulab / SJARACNe

ZJUFanLab / scRank

SciML / FiniteStateProjection.jl

xiaomingfu2013 / DelaySSAToolkit.jl

scastlara / ppaxe

connerlambden / Cube

DanShai / Genome

fran-romero-campero / BRC1NET

mims-harvard / ngmc

fran-romero-campero / ATTRACTOR

aureliolfdez / pyengnet

JBris / dream5_grn_data

scastlara / RPGeNet

spencer-hs / Gene-Expression-Networks-3-Brain-Region-R

tmichoel / BioFindr.jl

emosca-cnr / MOSUB

mariadsn / CyEnGNet-APP

studyfranco / GNEA

th789 / fflmediation

johndef64 / bertopic_graph