splicing

There are 1 repository under splicing topic.

HXM14 / Image-Forgery-Detection-using-Deep-learning
Image Forgery Detection using Deep learning Graduation project
image-forgery-detection deep-learning neural-network splicing copy-move ela forgery detect-tampring pretraind-models models-traind
Language:Python 78
namtpham / casia1groundtruth
Groundtruth images of tampering dataset CASIA 1.0
tampering groundtruth splicing copymove splicing-detection tampered-images forgery forgery-detection image-manipulation casia dataset groundtruth-dataset
56
dputhier / pygtftk
A python package and a set of shell commands to handle GTF files
bioinformatics gene gtf bed bigwig genomics transcript exon cds genomic tss tts splicing dna-sequences intron ngs chip-seq rna-seq
Language:Python 42
gagneurlab / MMSplice_MTSplice
Tissue-specific variant effect predictions on splicing
splicing vep-plugin variant-effect-prediction machine-learning
Language:Jupyter Notebook 39
nf-core / rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
nextflow nf-core pipeline workflow alternative-splicing rna rna-seq splicing
Language:Nextflow 34
gagneurlab / FRASER
FRASER - Find RAre Splicing Events in RNA-seq
rna-seq outlier-detection aberrant-splicing splicing rare-disease diagnostics r
Language:R 32
Kuanhao-Chao / splam
✂️ Deep learning-based splice site predictor that improves spliced alignments
alignment annotation convolutional-neural-networks deep-learning residual-networks rna-seq splice-junctions splicing spliced-alignment transcript-assembly
Language:C++ 29
CCICB / introme
Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
bioinformatics genomics splicing
Language:Shell 19
dzhang32 / dasper
Detecting Aberrant Splicing Events from RNA-sequencing data
splicing diagnostics rare-disease rna-seq-analysis
Language:R 15
SPiP
LBGC-CFB / SPiP
Splicing Prediction Pipeline
spip vcf splicing
Language:R 13
gruber-sciencelab / MAPP
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
bioinformatics rna-seq splicing polyadenylation bioinformatics-pipeline computational-biology snakemake workflow
Language:Python 10
dohlee / spliceai-pytorch
Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.
artificial-intelligence bioinformatics computational-biology deep-learning deep-neural-networks reproduction splicing variant-effect-prediction biology reproduction-code
Language:Jupyter Notebook 8
vrmelo / SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
rna-seq splicing-quantification splicing splicing-analyses python3
Language:Python 8
ylab-hi / ScanNeo2
Snakemake-based computational workflow for neoantigen prediction from diverse sources
epitope gene-fusion indels neoantigens peptide snakemake snakemake-workflow splicing exitron neoepitope
Language:Python 7
comprna / Junckey
Collection of scripts for computing PSI of junction clusters
splicing aberrant-splicing junctions-clusters read-junctions
Language:Python 6
bpucker / ncss2018
Genome-wide investigation of non-canonical splice sites
non-canonical splicing genomics transcriptomics plants genome-wide rna-seq rna-seq-analysis
Language:Python 5
casanova-lab / BPHunter
Genome-wide detection of human variants that disrupt intronic branchpoints
ngs branchpoint splicing intron genetics software
Language:Python 5
esebesty / SplicingFactory
Splicing Diversity Analysis for Transcriptome Data
rna-seq transcriptomics splicing shannon-entropy gini-index simpson-index
Language:R 4
yuhuihui2011 / VaSP
Quantification and Visualization of Variations of Splicing in Population
rna-seq alternative-splicing statistics visualization splicing ballgown sqtl 3s-scores
Language:R 3
jalwillcox / Calculate-PSI
A script used to calculate percent spliced-in (PSI) values from bulk RNA sequencing data.
rna-seq rnaseq psi splicing rna-seq-analysis rna-splicing bulk-rna-seq percent-spliced-in rna-splicing-analysis
Language:Shell 2
RajLabMSSM / leafcutter-pipeline
Differential splicing and visualisation pipeline for the Raj lab
rna-seq pipeline splicing
Language:Python 2
remittor / wcpatcher
WCP - archives browsing accelerator for Total Commander
totalcmd accelerator patch splicing plugin
Language:C++ 2
ashleymaeconard / time2splice
Method to identify temporal and sex-specific alternative splicing from multi-omic data, specifically RNA-seq + (CUT&RUN or ChIP-seq).
alternative-splicing isoforms multi-omics sexes splicing time-series transcription-factors
Language:Shell 1
dzhang32 / auto_splice
Docker image for running leafcutter and dasper
leafcutter dasper splicing docker
Language:R 1
Kuanhao-Chao / splam-analysis-results
all the scripts to reproduce the results in the splam paper
benchmark rna-seq splice-junction spliced-alignment splicing
Language:Python 1
limeng12 / intron_order
A method to calculate intron splicing order
splicing r intron-splicing-order
Language:R 1
quartiq / ai9
CLI tool using Bluetooth and Python to control the Signalfire AI-9 Fiber Fusion Splicer
bluetooth fiber optics python splicing bleak fusion-splicer
Language:Python 1
RajLabMSSM / STMN2-splicing
Analysis of cryptic splicing in the STMN2 locus across the NYGC ALS consortium
als ftd tdp-43 splicing snakemake
Language:Python 1
slipnitskaya / regulAS
regulAS: A Bioinformatics Tool for the Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data.
bioinformatics machine-learning omics python rna-seq software splicing transcriptomics
Language:Python 1
snbogan / Sp_RRBS_ATAC
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
rna-seq genomics expression epigenetics atac-seq edger rrbs splicing
Language:R 1
streaming-university / QoMEX23-demo
QoMEX'23 Demo Paper - Quality Upshifting with Auxiliary I-Frame Splicing
encoding iframe splicing
Language:JavaScript 1
Ven0maus / UnitySpriteSplicer
Slices a sprite into multiple square sprites, supports rotation and scaling
splice splicing split sprite sprites csharp shatter splitter splitting texture texture2d unity unity2d unity3d splicer destruction spritedestruction
Language:C# 1
vidboda / ComputeDeltaESRSeq
A simple Perl script to compute DeltaESRSeq to predict exon skipping induced by exonic variants
bioinformatics-tool variants exonic-variants splicing
Language:Perl 1
SimonHegele / Ivoforms
A package dedicated to the simulation of sequencing read data corresponding to randomly generated genes with predifined splice-models for the evaluation of transcriptome assembly tools
isoforms simulation splicing transcriptomics
Language:Jupyter Notebook 0
ylaboratory / splitpea
A tool for calculating PPI network rewiring due to alternative splicing
bioinformatics cancer ppi-networks protein-protein-interaction splicing
Language:Jupyter Notebook 0
Indronil-Prince / Transcriptome-Assembly
Bioinformatics Programming - Transcriptome Assembly
bioinformatics r hisat2 star igv splicing transcriptome-assembly
Language:Jupyter Notebook

splicing

HXM14 / Image-Forgery-Detection-using-Deep-learning

namtpham / casia1groundtruth

dputhier / pygtftk

gagneurlab / MMSplice_MTSplice

nf-core / rnasplice

gagneurlab / FRASER

Kuanhao-Chao / splam

CCICB / introme

dzhang32 / dasper

LBGC-CFB / SPiP

gruber-sciencelab / MAPP

dohlee / spliceai-pytorch

vrmelo / SPLICE-q

ylab-hi / ScanNeo2

comprna / Junckey

bpucker / ncss2018

casanova-lab / BPHunter

esebesty / SplicingFactory

yuhuihui2011 / VaSP

jalwillcox / Calculate-PSI

RajLabMSSM / leafcutter-pipeline

remittor / wcpatcher

ashleymaeconard / time2splice

dzhang32 / auto_splice

Kuanhao-Chao / splam-analysis-results

limeng12 / intron_order

quartiq / ai9

RajLabMSSM / STMN2-splicing

slipnitskaya / regulAS

snbogan / Sp_RRBS_ATAC

streaming-university / QoMEX23-demo

Ven0maus / UnitySpriteSplicer

vidboda / ComputeDeltaESRSeq

SimonHegele / Ivoforms

ylaboratory / splitpea

Indronil-Prince / Transcriptome-Assembly