Li meng's repositories
intron_order
A method to calculate intron splicing order
algorithms-illuminated
My notes for Tim Roughgarden's awesome course on Algorithms and his 4 part books
AlignDemo
Sequence Alignment Algorithm Demo
Alleloscope
Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.
CLRS-1
📚 Solutions to Introduction to Algorithms Third Edition
cs-video-courses
List of Computer Science courses with video lectures.
d3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
data-science-sequencing.github.io
Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford
DrugAnalysis
FAERSAnalysis toolkit
ExonImpact
Prioritizing MISO events' pathogenic effect
giab_data_indexes
This repository contains data indexes from NIST's Genome in a Bottle project.
HapCUT2
software tools for haplotype assembly from sequence data
math-science-video-lectures
List of Science courses with video lectures
mit-deep-learning-book-pdf
MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville
mixOmics
Development repository for the Bioconductor package 'mixOmics '
mwc
This repository contains the C++ source codes for the paper: Sun Y, Li X, Erst A. Using Statistical Measures and Machine Learning for Graph Reduction to Solve Maximum Weight Clique Problems. IEEE Transactions on Pattern Analysis and Machine Intelligence, accepted in Nov 2019.
phylonium
♥ Fast and Accurate Estimation of Evolutionary Distances
PureCLIP
Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
sg-nex-data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
SYMPHONY
SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features
tre
The approximate regex matching library and agrep command line tool.
TTAnalysisSolutions
Solutions to the exercises Terence Tao's Analysis I.