splicing-quantification

There are 1 repository under splicing-quantification topic.

comprna / SUPPA
SUPPA: Fast quantification of splicing and differential splicing
psi-calculation splicing-quantification differential-splicing-analysis transcript-isoform psi-values clustered-events inclusion-level
Language:Python 243
nsalomonis / altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
rna-seq-data alternative-splicing scrna-seq-data bioinformatics-pipeline clustering pathway-analysis network-analysis splicing-quantification splicing-visualization python fastq-anaysis bam-files single-cell-splicing cell-cycle cell-type-classification marker-gene-analysis graphical-interface command-line-tool pagerank louvain-community-detection
Language:Python 91
noush-joglekar / scisorseqr
scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
differential-analysis long-read-sequencing single-cell-rna-seq splicing-quantification
Language:R 34
nuno-agostinho / psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
splicing-quantification data-analyses alternative-splicing tcga differential-splicing-analysis gtex survival bioconductor sra recount2 differential-gene-expression gene-expression rna-seq-data vast-tools
Language:R 33
vrmelo / SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
rna-seq splicing-quantification splicing splicing-analyses python3
Language:Python 8
guigolab / ipsa-nf
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
nextflow ngs rna-seq splicing-quantification splicing-event bioinformatics genomics crg guigo pipeline splice-junctions splicing-analyses
Language:Perl 7
nuno-agostinho / rmats-docker
Docker to run rMATS for splicing quantification and analysis
docker rmats alternative-splicing splicing-quantification
Language:Python 3
nuno-agostinho / miso-docker
Docker to run MISO for splicing quantification and analysis
docker miso alternative-splicing splicing-quantification
Language:Python
nuno-agostinho / suppa-docker
Docker to run SUPPA for splicing quantification and analysis
suppa splicing-quantification docker alternative-splicing
Language:Python
nuno-agostinho / vast-tools-docker
Docker to run VAST-TOOLS for splicing quantification and analysis
docker vast-tools alternative-splicing splicing-quantification
Language:Dockerfile
nuno-agostinho / whippet-docker
Docker to run Whippet for splicing quantification and analysis
docker whippet alternative-splicing splicing-quantification
sivkri / splicing-events-calculation
Calculate five major splicing events using rMATS followed by annotation
splicing splicing-quantification splicing-analyses splicing-event splicing-visualization splicing-event-filter splicing-detection splicing-annotation
Language:Jupyter Notebook