splice-junctions

There are 0 repository under splice-junctions topic.

mozack / abra2
ABRA2
abra dna indels ngs realigner rna splice-junctions
Language:Java 92
Kuanhao-Chao / splam
✂️ Deep learning-based splice site predictor that improves spliced alignments
alignment annotation convolutional-neural-networks deep-learning residual-networks rna-seq splice-junctions splicing spliced-alignment transcript-assembly
Language:C++ 49
EI-CoreBioinformatics / portcullis
Splice junction analysis and filtering from BAM files
portcullis junction splice-junctions bam-files filter
Language:C++ 40
guigolab / ipsa-nf
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
nextflow ngs rna-seq splicing-quantification splicing-event bioinformatics genomics crg guigo pipeline splice-junctions splicing-analyses
Language:Perl 9
benniatli / Spliceformer
45k context transformer for splice site prediction implemented with PyTorch. The code will be added soon.
hard-attention rna-seq splice-junctions splice-site splice-site-prediction splice-variants transformer transformer-models pytorch
Language:Jupyter Notebook 2
dieterich-lab / primex
primer-design primer3 splice-junctions
Language:R 1
jnoms / SV40_transcriptome
Toolkit and pipeline for processing short- and long-read RNA sequencing data.
nanopore pacbio rnaseq splice-junctions
Language:Jupyter Notebook 1
nalaekaw / exon_intron
Deep neural network for splice sites prediction
cnn exon intron splice-junctions splice-site
Language:Jupyter Notebook 1
SoniaRuiz / splicing-accuracy-manuscript
Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".
ageing gtexv8 rna-binding-proteins rna-seq-analysis splice-junctions splicing-analyses recount3
Language:R 1
biofcallejas / pysplicing
Splicing assembly for non-model organisms using RNAseq data
rnaseq-analysis splice-junctions splicing-detection splicing-event
Language:Python 0
dpatrinos / PrimerDesigner
A tool to create sequences for primers targeting exon-exon splice junctions
primers rna-seq splice-junctions bioinformatics cli python
Language:Python 0
lcscs12345 / riboss
Comparing translation of open reading frames within individual transcripts
ribosome-profiling ribo-seq translation isoform-quantification rna-seq uorfs bioinformatics-tool
Language:Python 0
sivkri / RNASeq-Analysis-JunctionSeq-QoRTs
This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.
splice-junctions spliced-alignment splice-variants bioinformatics data-analysis differential-splicing genomics quality-control rna-seq rna-seq-analysis transcriptomics junctionseq qorts
Language:R 0
borgessbarbara / TranscriptClean-NF
[under development during Nextflow Natal Course 2025] An implementation of TranscriptClean tool into Nextflow
bioinformatics indels mismatches nextflow nf-core splice-junctions
Language:Nextflow
Moeinh77 / DNA-sequene-classificaiton
Classification of Splice Junction sites using Neural Networks with Python and Keras
convolutional-neural-networks deep-learning dna-sequences neural-networks splice-junctions
Language:Jupyter Notebook