Computational Biology Group @ Children's Cancer Insitute

introme

Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation

SpliceVarDB

2020-hrPC-landscape

development version for the Landscape paper

TCGAgistic

Easily access TCGA gistic data

CRUX

SpliceAI-blackbox

Using explainable AI to crack open the black box of SpliceAI

somaticflags

Database of genes whic frequently sustain somatic mutations, but are unlikely to drive cancer

vcf2mafR

Convert VCFs and VCF-related formats to MAF

consHLA

ConsHLA: consensus HLA typing from NGS data

disTIL

The disTIL immunoprofiling toolkit

microbialpanels

Curated collections of related microbes

CBWebsite

ccicb.r-universe.dev

repo listing packages to include in a personal cran-like repository (r_universe)

Clinical-WGS-labs

A database of clinical WGS testing providers

ecDNAutils

a collection of utility functions for parsing linx output, with a focus on ecDNA

interchange

Convert between common biological filetypes

interchangeGUI

Easily Convert Common Filetypes for Biological Data

iPASS

iPASS

PCAWGmutations

Provides easy access to PCAWG datasets

PCAWGmutationsDB

PCAWG mutations R package

regulatorUtils

A collection of utilities and data for simplifying analyses of noncoding variation

rig

Identify radiation induced gliomas using a gene expression signature

SplicingGuidelines2024

Supporting code for figures in our 2024 Splice Guidelines Manuscript (Sullivan et al)

TCGAexpression

What the Package Does (One Line, Title Case)

TCGAgisticDB

Database of TCGA precomputed GISTIC2 analysis