RajLabMSSM

echolocatoR

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

ggLocusZoom

Create LocusZoom-style plots in R.

catalogueR

Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

snakeSV

Snakemake pipeline for SV discovery and analysis

MiGA_public_release

isoseq-pipeline

pipeline for working with PacBio long read RNA data using the outputs of isoseq3

downstream-QTL

set of scripts and pipelines to work with QTL results

echoplot

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

QTL-mapping-pipeline

A snakemake pipeline for QTL mapping. Based on the GTEX pipeline

echoannot

echoverse module: Annotate fine-mapping results

leafcutter-pipeline

Differential splicing and visualisation pipeline for the Raj lab

mmQTL-pipeline

Monocytes_RNA_Editing_Analysis

RNA-pipelines

A repo to contain various RNA-seq processing pipelines, to cut down how many different repos I have.

devoptera

⏩ Practical tools for R developers :rewind: :wrench::bat: :hammer::bat: :toolbox::bat:

echoconda

echoverse module: conda environment handling

echoLD

echoverse module: LD downloading and processing

Genotype_QC_Pipeline_2.0

ldsc

LD Score Regression Pipeline

New_beginnings_2.0

AR_Rotation

downloadR

echoverse module: Single- and multi-threaded downloading functions.

echodata

echoverse module: Example data.

echodeps

echoverse module: Create package dependency graphs

echogithub

echoverse module: Extract data and metadata from GitHub

echotabix

echoverse module: Tabix indexing and querying.

echoverseTemplate

Self-updating template for creating echoverse R packages.

isoMiGA

The isoform-centric microglia genomic atlas.

MBV_Pipeline

RajLab_website

Official website for the Raj Lab detailing personnel, updates, current projects and opportunities.