splicing-analyses

There are 0 repository under splicing-analyses topic.

• isotools

  MatthiasLienhard / isotools

  IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

  lrtspacbioisoseqbioinformaticssplicing-analysestranscriptomicspython3
  Language:Jupyter Notebook 22

• VCCRI / Ularcirc

  An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

  circrnarna-seq-analysiscircular-rnasequencing-rnarna-seqsplicing-analysessplicing-visualizationbacksplicing
  Language:R 15

• gagneurlab / FRASER-old-gagneurlab

  outlier-detectionrna-seqrsplicing-analysesdiagnosticsmendelian-geneticsbeta-binomial
  Language:R 13

• vrmelo / SPLICE-q

  SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

  rna-seqsplicing-quantificationsplicingsplicing-analysespython3
  Language:Python 10

• guigolab / ipsa-nf

  Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

  nextflowngsrna-seqsplicing-quantificationsplicing-eventbioinformaticsgenomicscrgguigopipelinesplice-junctionssplicing-analyses
  Language:Perl 8

• matteocereda / RNAmotifs

  RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

  splicing-analysessplicing-visualizationrna-splicing-maprna-binding-proteinsmultivalent-rna-motifsalternative-splicing-analysisexonidentify-clustersrna-bindingr
  Language:C++ 8

• BatistaLab / Exon9A_Nanopore

  Nanopore direct RNA sequencing for cryptic splice mutation in HLRCC

  nanoporesplicing-analyses
  Language:HTML 0

• SoniaRuiz / splicing-accuracy-manuscript

  Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".

  ageinggtexv8rna-binding-proteinsrna-seq-analysissplice-junctionssplicing-analysesrecount3
  Language:HTML 0

• sivkri / splicing-events-calculation

  Calculate five major splicing events using rMATS followed by annotation

  splicingsplicing-quantificationsplicing-analysessplicing-eventsplicing-visualizationsplicing-event-filtersplicing-detectionsplicing-annotation
  Language:Jupyter Notebook