National Institute of Mental Health Data Science & Sharing Team's repositories
dataset-phenotypes
Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
OpenCogData
Collection of publicly available cognitive task datasets
dsst-defacing-pipeline
Defacing algorithm to improve and evaluate accuracy for large datasets.
ndx-photostim
holographic photostimulation extension to NWB standard
dataSci_job_ad
Open Data Scientist Job Ad
dataset-browser
A web app for searching metadata of neuroimaging studies and NIMH IRP studies.
DTI-Phenotyping
Scripts used to curate and analyze the DTI-Phenotyping dataset.
Irritability-ADHD-symptoms-and-inhibitory-control-in-the-ABCD-Study
Analysis code and meta-data for manuscript on irritability, ADHD symptoms, and inhibitory control in ABCD Study
metasearch
OpenNeuroLab MetaSearch App
nda-study-1887
Scripts and data files used to convert anatomical MRI dicom data of the Autism Subtypes study to BIDS format, and to upload the dataset to NIMH Data Archive
neurodocker-tester
A quick and dirty test ground for GitHub Actions/Workflows, the GitHub Packages service, and publishing a basic Neurodocker image.
ohbm2024tables
Holds a nice PDF version of HCP and PNC tables used in this OHBM 2024 abstract's analysis.
ohbm_2020_poster
code and data for the poster Identifying Data Sharing and Data Reuse in Full-text NIMH-funded papers
rcps-modified-petprep
A heavily modified version of PETPrep to process rates of cerebral protein synthesis (rCPS) data from four NIMH studies.
bids-validator-comparator
A small set of scripts to BIDS-validate and compare validator version outputs for OpenNeuro datasets.
nda-bids-upload
For uploading BIDS data to the NDA.
NIH_IRP_PubDB
An application to catalog and measure NIH IRP publications.
osm
OpenSciMetrics (OSM) applies NLP and LLM-based metrics and indicators related to transparency, data sharing, rigor, and open science on biomedical publications.