obo

There are 2 repositories under obo topic.

protegeproject / protege
Protege Desktop
protege protege-desktop ontology owl obo ontology-engineering knowledge-graph knowledge-management java reasoning rdf semantics
Language:Java 1141
protegeproject / webprotege
The webprotege code base
ontology ontology-engineering knowledge-graph webapp owl obo ontologies rdf semantics knowledge-management
Language:Java 687
human-phenotype-ontology
obophenotype / human-phenotype-ontology
Ontology for the description of human clinical features
hpo ontology phenotype phenotyping ontologies obo owl semantic-web obofoundry monarchinitiative
Language:Makefile 321
ontodev / robot
ROBOT is an OBO Tool
ontology owl obo obofoundry
Language:Java 286
ontology-development-kit
INCATools / ontology-development-kit
Ontology lifecycle management
obo ontology continuous-integration owl protege travis robot obofoundry monarchinitiative
Language:Jinja 270
althonos / pronto
A Python frontend to (Open Biomedical) Ontologies.
obo owl ontology parser python bioinformatics semantic-web obofoundry obo-graphs
Language:Python 243
go-ontology
geneontology / go-ontology
Source ontology files for the Gene Ontology
ontology go owl obo obofoundry gene-ontology geneontology functional-annotation
Language:Makefile 236
OBOFoundry / OBOFoundry.github.io
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
ontology-registry obo ontology semantic-web bioinformatics life-sciences metadata open-science open-source annotation biocuration obofoundry
Language:Python 180
dhimmel / obonet
OBO-formatted ontologies → networkx (Python 3)
obo ontology parser networkx python network rephetio obo-formatted-ontologies obo-files
Language:Python 137
biolink / ontobio
python library for working with ontologies and ontology associations
bioinformatics gene-ontology graph obo obofoundry ontology ontology-tools python rdf semantic-web sparql
Language:Python 128
obi-ontology / obi
The Ontology for Biomedical Investigations
bioinformatics obo obofoundry ontology owl semantic-web
Language:Python 79
biopragmatics / pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
bioinformatics biopragmatics bioregistry obo obofoundry ontologies
Language:Python 63
pato-ontology / pato
PATO - the Phenotype And Trait Ontology
phenotypes trait-ontology obo ontology units qualities quantities standards semantic-web obofoundry
Language:Makefile 59
evidenceontology / evidenceontology
Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.
obofoundry ontology evidence owl obo annotation
Language:HTML 50
Planteome / plant-trait-ontology
Explore the Plant Trait Ontology on the Planteome site.
plant-trait-ontology obofoundry owl obo plant-traits phenotype
Language:Python 46
rsc-ontologies / rxno
Name Reaction Ontology
obo owl molecular-processes reaction-ontology obofoundry
40
Knowledge-Graph-Hub / kg-obo
A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
obo obofoundry knowledge-graph ontology-infrastructure biolink monarchinitiative
Language:Python 32
environmental-exposure-ontology
EnvironmentOntology / environmental-exposure-ontology
Modular environmental exposures ontology
exposure obo ontology owl health environment obofoundry monarchinitiative
Language:Makefile 31
fastobo / fastobo
Faultless AST for Open Biomedical Ontologies.
obo obofoundry ast ontology
Language:Rust 28
fastobo / fastobo-py
Faultless AST for Open Biomedical Ontologies in Python.
ast parser python-extension rust python-bindings ontology obo obofoundry
Language:Rust 28
obo-behavior / behavior-ontology
Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypes
ontology neuro-behaviour-ontology behavioural-phenotypes web-ontology-language animal-behaviours obo obofoundry
Language:Makefile 25
ncbo / bioportal_web_ui
A Rails application for biological ontologies
ruby-on-rails bioportal open-source rdf owl obo ontology-repository semantic-web metadata annotation bioinformatics open-science
Language:JavaScript 23
bio-ontology-research-group / unit-ontology
An ontology of units of measurements
ontology units-of-measurement obo obofoundry
Language:Makefile 21
mobiusklein / psims
A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML
mzidentml mzml obo xml-serialization
Language:Python 20
chemkg / chemrof
Schema for chemistry ontology classes
chemistry ontology obo owl metaclass schema chebi linkml obofoundry
Language:Python 19
mgijax / mammalian-phenotype-ontology
Standard terms for annotating mammalian phenotypic data
obofoundry phenotyping ontology phenotype owl obo json mammals
Language:Makefile 19
aedera / anc2vec
Unsupervised neural network for learning embeddings of GO terms.
embeddings obo go gene-ontology autoencoder neural-network protein-protein-interaction protein-function
Language:Python 16
Planteome / plant-stress-ontology
An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Ontology of Plant Stress
abiotic-stresses biotic-stresses obo obofoundry ontology plant-stress
Language:Makefile 16
PROconsortium / PRoteinOntology
obofoundry biomedical-ontologies obo protein-ontology
Language:HTML 14
rsc-ontologies / rsc-cmo
Chemical Methods Ontology
chemical-methods-ontology ontology chromatography owl obo obofoundry
14
related-sciences / nxontology-data
NXOntology data: making ontologies accessible as simple JSON files
nxontology ontologies networkx taxonomies hierarchies obo pubchem python graphs networks network-biology
Language:Jupyter Notebook 12
damienbod / OnBehalfFlowOidcDownstreamApi
This demo shows how to implement the On Behalf Of flow between an Microsoft Entra ID protected API and an API protected using OpenIddict.
aad azuread access-token aspnetcore bearer dotnet jwt oauth oauth2 obo openiddict token-exchange entra
Language:C# 10
Planteome / plant-experimental-conditions-ontology
Repository for the Plant Experimental Conditions Ontology
obofoundry obo owl plant-treatments exposures
Language:Python 10
cmungall / sweet-obo-alignment
Alignment between ESIP SWEET and Open Bio Ontologies
obo ontology mapping environment environment-variables sweet obofoundry sssom
Language:Makefile 9
geneontology / neo
noctua entity ontology
ontology geneontology go-cam obo gaf annotation
Language:Perl 9
Phenomics / ontolib
A modern Java library for working with (biological) ontologies.
ontology hpo mpo obo ontology-matching
Language:Java 9

obo

protegeproject / protege

protegeproject / webprotege

obophenotype / human-phenotype-ontology

ontodev / robot

INCATools / ontology-development-kit

althonos / pronto

geneontology / go-ontology

OBOFoundry / OBOFoundry.github.io

dhimmel / obonet

biolink / ontobio

obi-ontology / obi

biopragmatics / pyobo

pato-ontology / pato

evidenceontology / evidenceontology

Planteome / plant-trait-ontology

rsc-ontologies / rxno

Knowledge-Graph-Hub / kg-obo

EnvironmentOntology / environmental-exposure-ontology

fastobo / fastobo

fastobo / fastobo-py

obo-behavior / behavior-ontology

ncbo / bioportal_web_ui

bio-ontology-research-group / unit-ontology

mobiusklein / psims

chemkg / chemrof

mgijax / mammalian-phenotype-ontology

aedera / anc2vec

Planteome / plant-stress-ontology

PROconsortium / PRoteinOntology

rsc-ontologies / rsc-cmo

related-sciences / nxontology-data

damienbod / OnBehalfFlowOidcDownstreamApi

Planteome / plant-experimental-conditions-ontology

cmungall / sweet-obo-alignment

geneontology / neo

Phenomics / ontolib