Manuel Rueda's repositories
beacon2-ri-tools
Beacon v2 Reference Implementation (Data ingestion tools) - Actively maintained by the original author
pheno-lens
Visualize and Perform Data Analytics on Phenotypic and Clinical Data Stored in GA4GH Standards and Beyond
pheno-search
Streamlined Searching in GA4GH-Standard Phenotypic and Clinical Data Repositories and Beyond
beacon-v2
Unified repository for the GA4GH Beacon v2 API standard
datamatrix2codes
Parser for strings obtained from Data Matrix 2D barcodes in medicine-boxes in Spain
EGA_declared_genome_ref
Script to parse the declared genome (from XML) in EGA submissions
EGA_inferred_genome_ref
Script to infer the reference genome from a VCF
EGA_metadata
Script to parse EGA datasets' metadata
Epitopes4Cancer
SRTI - Results in HTML from an immuno-oncology project developed in collaboration with Scripps scientists
RD-Connect_to_beaconv2
Scripts to convert RD-Connect data to Beacon v2
ScrippsCall
SRTI framework to perform variant calling and prioritization of WES
SG-Adviser-mtDNA
SRTI - web server to analyze mtDNA
SRTI-Variant-Browser
SRTI - web server to display genomic variations