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A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Grammar of Scalable Linked Interactive Nucleotide Graphics
The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and interpretation of results at all stages of the analysis process.
A 3D genome data processing tutorial for ISMB/ECCB 2017
Python API and Jupyter widget for Vitessce
Builds a docker container wrapping higlass-server and higlass-client in nginx
Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).
A utility script to manage local docker instances of HiGlass
Server component for HiGlass that manages and serves tiled data
Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
Jupyter Notebooks and other code for 4CE data visualizations.
Given a Frictionless Table Schema, generate an Excel template with input validation
OncoThreads longitudinal cancer genomics visualization project.
HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.
Utils for loading HuBMAP data formats
Notebooks for HuBMAP tutorial session (January 2023)