gehlenborglab
There are 0 repository under gehlenborglab topic.
hms-dbmi / UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Language:R 735- Language:JavaScript 303
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Language:JavaScript 257gosling-lang / gos
A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.
Language:Python 195Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Language:Jupyter Notebook 187Grammar of Scalable Linked Interactive Nucleotide Graphics
Language:TypeScript 155vitessce / vitessce
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
Language:JavaScript 145- Language:TypeScript 126
- Language:TypeScript 104
refinery-platform / refinery-platform
The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and interpretation of results at all stages of the analysis process.
Language:Python 102- Language:R 67
- Language:Java 57
A 3D genome data processing tutorial for ISMB/ECCB 2017
Language:Jupyter Notebook 48higlass / clodius
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
Language:Python 34- Language:R 32
Python API and Jupyter widget for Vitessce
Language:Python 30Builds a docker container wrapping higlass-server and higlass-client in nginx
Language:Shell 29Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
Language:Jupyter Notebook 27- Language:JavaScript 22
A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).
Language:R 20A utility script to manage local docker instances of HiGlass
Language:Python 18Server component for HiGlass that manages and serves tiled data
Language:Python 17Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
Language:Jupyter Notebook 13- Language:HTML 12
- visualization-notebooks
covidclinical / visualization-notebooks
Jupyter Notebooks and other code for 4CE data visualizations.
Language:Jupyter Notebook 11 - Language:JavaScript 11
hubmapconsortium / tableschema-to-template
Given a Frictionless Table Schema, generate an Excel template with input validation
Language:Python 11- OncoThreads
OncoThreads longitudinal cancer genomics visualization project.
Language:JavaScript 10 - Language:Jupyter Notebook 9
- Language:R 8
HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.
Language:Python 8- Language:HTML 6
- Language:HTML 6
Utils for loading HuBMAP data formats
Language:Python 6Notebooks for HuBMAP tutorial session (January 2023)
Language:Jupyter Notebook 6- Language:Jupyter Notebook 5
