Shadi's repositories
csc2541-ml-project
Modeling Uncertainty in RNNs for Time Series Forecasting
viprs-paper
Reproducible code for running the analyses in the paper "Fast and Accurate Bayesian Polygenic Risk Modeling with Variational Inference" (2022)
graph-alignment
Siamese Neural Network Architecture for Graph Alignment
tokyo-symposium-2024
Tokyo Symposium on Genomic Medicine (2024)
csc2431-project
Unsupervised DNA Methylation Analysis
DeepLoc-VAE
Semi-supervised VAE model for protein localization prediction from microscopy images
neutral-phenotype-model
Scripts and data for our manuscript on "Evolutionary dynamics of neutral phenotypes under DNA substitution models"
stratified-vs-mega-gwas
A comparative analysis of stratified vs. mega analysis strategies for GWAS.
unbiased-ldsc
Assumptions about frequency-dependent architectures of complex traits bias measures of functional enrichment
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
msp-gen
Driver scripts for genealogy simulations with msprime
msprime
Simulate genealogical trees and genomic sequence data using population genetic models
phasedibd
Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
shz9.github.io
Personal website
single-neuron-experiment
Experiments with teaching a single neuron the genetic code
vcf-zarr-publication
Manuscript and associated scripts for vcf-zarr publication