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Bio-Ontology Research Group (bio-ontology-research-group)

Bio-Ontology Research Group

bio-ontology-research-group

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Bio-Ontology Research Group at KAUST

Location:Thuwal, Saudi Arabia

Home Page:http://borg.kaust.edu.sa

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Bio-Ontology Research Group's repositories

deepgoplus

DeepGO with GOPlus axioms

Language:PythonLicense:BSD-3-ClauseStargazers:86Issues:16Issues:33

mowl

mOWL: Machine Learning library with Ontologies

Language:PythonLicense:BSD-3-ClauseStargazers:49Issues:18Issues:28

unit-ontology

An ontology of units of measurements

Language:MakefileLicense:CC-BY-4.0Stargazers:18Issues:13Issues:67

deepgo2

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mowl-tutorial

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deepgometa

Language:PythonLicense:BSD-3-ClauseStargazers:5Issues:7Issues:0

EmbedPVP

EmbedPVP: Embedding-based Phenotype Variant Predictor

Language:PythonLicense:GPL-3.0Stargazers:2Issues:6Issues:1

KSA001

Telomere-2-Telomere Genome from Saudi Arabia

License:NOASSERTIONStargazers:2Issues:11Issues:0

16SProcessing

A Nextflow workflow to run vsearch for short read 16S data

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deepgoweb

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metabolitenet

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pangenome

Pangenome workflow in CWL

Language:Common Workflow LanguageLicense:BSD-3-ClauseStargazers:1Issues:11Issues:0

PU-GO

Predicting protein functions using positive-unlabeled ranking with ontology-based priors

Language:PythonStargazers:1Issues:11Issues:1

CardinalityPhenotypes

Create a corrected representation of cardinality phenotypes

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blah8

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catE

Category-theoretic representation of ALC theories

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Causal-relations-between-diseases

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foldcomp

Compressing protein structures effectively with torsion angles

License:GPL-3.0Stargazers:0Issues:0Issues:0

Genomic_context

Protein function prediction (GO classes) using genomic context

Language:Jupyter NotebookStargazers:0Issues:6Issues:0

geometric_embeddings

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hguploader

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LLM_GenePrioritization

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Metagenome_MGWAS

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Metagenomic-DeepFRI

Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:1Issues:0

OntoNER

This repository accommodates data for our study on exploring use of ontologies for distant NER

License:CC0-1.0Stargazers:0Issues:11Issues:0

owlweb

This owlweb provides an updated version of the aberowl with the latest package versions for enhanced functionality.

Language:JavaScriptLicense:NOASSERTIONStargazers:0Issues:1Issues:0

phenotype-reactor

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sccmecfinder

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semrec2023

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t2t

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