phenotype-prediction

There are 1 repository under phenotype-prediction topic.

transbioZI / BioMM
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
biomm phenotype-prediction omics high-dimensional machine-learning gwas gene-expression dna-methylation epigenomics genomics transcriptomics random-forest svm elasticnetregression kegg-pathway go-pathway
Language:HTML 14
grimmlab / easyPheno
easyPheno: a model agnostic phenotype prediction framework
genomic-selection phenotype-prediction deep-learning machine-learning
Language:Python 10
univieCUBE / phenotrex
Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn
bioinformatics comparative-genomics data-driven ecological-roles machine-learning metagenomics phenotype-prediction sequence-analysis svm xgb xgboost
Language:Python 8
foundation29org / RareCrowds
Package to serve public and freely-available data from rare disease patients.
rare-disease patient-data phenotype-ontologies phenotype-prediction rare-phenotypes public-data open-data
Language:Python 7
niekverw / ukpheno
Create binary traits for UKbio using ICD/OPER/medication/self reports/age of diagnosis/visit-dates etc). The current output includes variables on history, study visit, future, time-to-first-event, episode-duration. this is a starting point to construct your favorite trait in ukb. The code was written on the go, so not super clean code..
ukbiobank phenotype-prediction icd-10 icd-9 r uk-biobank
Language:R 4
grimmlab / phenotype_prediction
A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species
arabidopsis-thaliana blup deep-neural-networks genomic-selection machine-learning phenotype-prediction plant-phenotyping
Language:Jupyter Notebook 2
robail-yasrab / RSML-to-Image
annotataion gt image image-classification image-processing image-segmentation phenotype phenotype-prediction phenotyping plant plants python root root-phenotyping rootnav rootnav2 rsml
Language:Python 2
ivanwilliammd / IDeRare
Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi
exome-sequencing-analysis gene-prioritization phenotype-exchange-format phenotype-genotype-information phenotype-ontologies phenotype-prediction rare-disease rare-variant-analysis
Language:Jupyter Notebook 1
ivanwilliammd / iderare-pheno
IdeRare Phenotype Analysis suite : Convert Indonesia SATUSEHAT terminology (SNOMED-CT, LOINC, ICD-10) to Rare Disease Terminology / Ontology (HPO, OMIM) and find the likelihood differential gene and disease explaining patient phenotype
phenotype phenotype-exchange-format phenotype-genotype-information phenotype-ontologies phenotype-prediction rare-disease
Language:Jupyter Notebook 1
quantitative_mutations
pyubero / quantitative_mutations
A class based on COBRApy to handle quantitative mutations on metabolic models.
cobrapy phenotype-prediction
Language:Jupyter Notebook 1
superphy / kmer
Using machine learning to predict E. coli phenotypes
ecoli phenotype-prediction
Language:TeX 1
Yun-Ching-Chen / GIBI
Bayesian Network Model Predicting Personal Phenotypes using Genome-Sequencing Data
phenotype-prediction genome-sequencing bayesian-inference
Language:Python 1
FloFlo93 / PICA-to-go
Phenotype prediction pipeline
machine-learning bioinformatics phenotype-prediction
Language:Java 0
gomezlab / kinotypeClusteringAndRegression
Joint Repository of GR Metrics Regression and Kinase Interaction Network (KIN) Clustering
systems-biology graph-clustering kinome kinases protein-protein-interaction phenotype-prediction proteomics
Language:Jupyter Notebook 0
samanta-anupam / pheno-predictor
Comp Bio fall 2017 project
deep-learning artificial-neural-networks xgboost phenotype-prediction dimensionality-reduction
Language:Jupyter Notebook

phenotype-prediction

transbioZI / BioMM

grimmlab / easyPheno

univieCUBE / phenotrex

foundation29org / RareCrowds

niekverw / ukpheno

grimmlab / phenotype_prediction

robail-yasrab / RSML-to-Image

ivanwilliammd / IDeRare

ivanwilliammd / iderare-pheno

pyubero / quantitative_mutations

superphy / kmer

Yun-Ching-Chen / GIBI

FloFlo93 / PICA-to-go

gomezlab / kinotypeClusteringAndRegression

samanta-anupam / pheno-predictor