phenopackets-v2

There are 0 repository under phenopackets-v2 topic.

CNAG-Biomedical-Informatics / convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
cdisc phenopacket redcap omop-cdm beacon-v2 convert bff pxf beacon ehr ehr-data ehr-phenotyping biomedical-informatics cdisc-odm cnag health-data phenopackets-v2 convert-pheno omop csv
Language:Perl 9
BIH-CEI / ERKER2Phenopackets
A pipeline of ERKER data into the phenopackets data structure.
phenopackets-v2 pipeline rare-diseases
Language:Python 4
CNAG-Biomedical-Informatics / pheno-ranker
Pheno-Ranker is a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2.
beacon-v2 bff csv data-exploration json pxf phenopackets-v2 semantic-similarity semantic-similarity-measures ga4gh qrcode vcf yaml bioinformatics ehr genomics health-data cnag biomedical-informatics
Language:Perl 4
CNAG-Biomedical-Informatics / pheno-ranker-ui
The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2
beacon-v2 bff data-exploration golem json phenopackets-v2 pxf r-shiny semantic-similarity semantic-similarity-measures r-shiny-apps
Language:R 1
mrueda / beacon2-ri-tools
Beacon v2 Reference Implementation (Data ingestion tools) - Actively maintained by the original author
beacon beacon-friendly-format beacon-v2 bff json mongodb phenopackets-v2 pxf vcf beacon2-ri-tools beacon2-reference-implementation beacon2-ri cnag data-exchange
Language:Perl 1
mrueda / pheno-lens
Visualize and Perform Data Analytics on Phenotypic and Clinical Data Stored in GA4GH Standards and Beyond
beacon-v2 clinical-data elasticsearch kibana kibana-visualization natural-language-processing phenopackets-v2 phenotype phenotypic-data beacon2-ri-tools pheno-lens pheno-ranker pheno-search
1
mrueda / pheno-search
Streamlined Searching in GA4GH-Standard Phenotypic and Clinical Data Repositories and Beyond
beacon-v2 beacon2-ri-tools clinical-data convert-pheno elasticsearch json pheno-lens pheno-search phenopackets-v2 phenotype search
Language:Python 1