metacyc

There are 0 repository under metacyc topic.

hallamlab / pathway2vec
Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction
biocyc bioinformatics deep-learning embedding heterogeneous-information-networks metacyc metapath pathway-prediction pathway-tools
Language:Python 15
hallamlab / mlLGPR
Metabolic pathway inference using multi-label classification with rich pathway features
pathway-prediction metagenomics multi-label-learning biocyc bioinformatics logistic-regression pathway-tools metacyc
Language:Python 6
hallamlab / reMap
reMap: relabeling metabolic pathway data with groups to improve prediction outcomes
relabel multi-label-classification metabolic-pathways multi-label-learning bags bags-of-pathways biocyc metacyc pathway2vec bioinformatics topic-modeling centroid embeddings groups groups-of-pathways
Language:Python 1
hallamlab / leADS
leADS: improved metabolic pathway inference based on active dataset subsampling
multi-label-imbalance multi-label-classfications multi-label-learning active-dataset-subsampling acquisition-functions metabolic-network biocyc metacyc metabolic-pathways metabolic-pathway-prediction metagenomics bioinformatics pathway-tools
Language:Python 0
arbasher / prepBioCyc
prepBioCyc: Preprocess BioCyc files
biocyc bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-tool data-wrangling graph heterogeneous-network metabolic-network metabolic-pathways metacyc metagenomics
Language:Python
hallamlab / chap
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
biocyc bioinformatics metabolic-network metabolic-pathways metabolic-reconstruction metacyc metagenomics pathway-analysis pathway-enrichment-analysis pathway-prediction pathway-reconstruction pathway-tools topic-modeling
Language:Python
hallamlab / triUMPF
Metabolic pathway inference using non-negative matrix factorization with community detection
multi-label-classification multi-label-learning metabolic-pathways metabolic-reconstruction non-negative-matrix-factorization subnetwork community-detection pathway-prediction biocyc metagenomics bioinformatics metacyc pathway2ec-association-matrix
Language:Python