Aberystwyth Systems Biology

limbus

LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

MEDIALpy

A small python package that allows the user to look up common medical abbreviations.

DIMEpy

Python package for the high-throughput nontargeted metabolite fingerprinting of nominal mass direct injection mass spectrometry directly from mzML files.

pyISOPACh

A "fairly fast" ISOtope PAttern Calculator for Python

pyMEAN

A Python package for metabolite enrichment analysis.

dimedbpy

Python wrapper for the DIMEdb REST API.

limbus-qrtk

An extremely simplistic QR/DataMatrix/Barcode toolkit for the LImBuS project.

DIMEdb

DIMEdb: Metabolite identification web service.

deepseq2vec-repo

Repositories for the DeepSeq2Vec web portal

matilda

SCTTSRApy

A Python Interface to the SNOMED CT Snowstorm API

sog

Simple Ontology Grep - A REST service for searching near-matches in ontology labels

D-cOG

cOG Annotation of protein sequences using deep learning

ann2sql

Script to iterate over rows in a SQL database, annotate with MedCATservice, and store in a destination database.

CLICOSTA

National Clinical Coding Standardiser

deep-annot

dimedb-lts

Long Term Support version of the DIMEdb Metabolite identification web service.

icd10-cm-ng

ICD-10 CM medical classification list by the World Health Organization

icd9-to-snomedct

Shell script to create TTL file of annotations to augment an existing ICD9 triple graph to point to SNOMEDCT concepts.

limbus-ova

Repostiory Containing the Open Virtualisation Appliance for various releases of LImBuS

MIMIC-III-to-SNOMED

Preprocessed SNOMED relations files that connect drugs and diagnoses from MIMIC-III to SNOMED. Fork of cscihkbu/Snomed-Proprocessed.

n2c22018t12sql

Tool for importing n2c2 2018 Track 1 "Cohort Selection for Clinical Trials" data into SQL