integrative-analysis

There are 0 repository under integrative-analysis topic.

BioinformaticsFMRP / TCGAbiolinks
TCGAbiolinks
integrative-analysis bioc r tcgabiolinks bioconductor gdc tcga tcga-data
Language:R 275
Bohdan-Khomtchouk / Biochat
Natural language processing of Gene Expression Omnibus data
natural-language-processing metadata integrative-analysis metadata-extraction common-lisp gene-expression-omnibus nlp lisp bioinformatics computational-biology
Language:Common Lisp 49
xqwen / fastenloc
Colocalization analysis of genetic association signals
bioinformatics bioinformatics-analysis genetic-association-analysis integrative-analysis colocalization
Language:C++ 40
KChen-lab / bindSC
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
integrative-analysis single-cell-analysis
Language:R 31
sqjin / scAI
An unsupervised approach for the integrative analysis of single-cell multi-omics data
single-cell-multiomics single-cell-multimodal-omics simultaneous-measurements integrative-analysis sparse-epigenomic-profile
Language:R 24
corbinq / GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
gwas gwas-summary-statistics gene-based genetic-analysis twas integrative-analysis functional-annotation genetic-epidemiology regulatory-elements
Language:C++ 11
shu-hai / D-CCA
A Decomposition-based Canonical Correlation Analysis for High-dimensional Datasets (JASA-20 paper)
data-fusion data-integration high-dimensional-data integrative-analysis multiblock-structures multiview
Language:Python 10
AberystwythSystemsBiology / pyMEAN
A Python package for metabolite enrichment analysis.
metabolomics metabolomics-pipeline integrative-analysis pathway-enrichment-analysis
Language:Python 8
samhinshaw / metabridge_shiny
🕸 Network-based multi-omic integration of metabolomics data.
integrative-analysis shiny rstats bioinformatics metabolomics
Language:R 7
inukj / MONTI
MONTI is a tool for analyzing large multi-omics cancer cohort data in association with clinical featuers
integrative-analysis multi-omics
Language:Jupyter Notebook 4
fchen365 / surf
The statistical utility for RBP functions (SURF)
package rna-seq clip-seq integrative-analysis surf differential-analysis alternative-splicing
Language:R 2
hancockinformatics / MetaBridgeShiny
Repository for the MetaBridge Shiny app.
bioinformatics integrative-analysis metabolomics shiny utility
Language:R 2
ParkerLab / 2021_islet-rfx6
Code for Walker, Saunders, Rai et al., (2021).
islets single-cell multiome integrative-analysis gwas atac-seq rna-seq codex wgcna rfx6 pancreas alpha-cell beta-cells
Language:Roff 2
jokergoo / epik
Integrative analysis for epigenomic sequencing data
integrative-analysis
Language:HTML 1
JunWangmath / GeP-HMRF
Hidden Markov Random Field Model - Inferring Gene-Disease Association by an Integrative Analysis of eQTL GWAS and Protein-Protein Interaction data
eqtl gwas hidden-markov-random-field hmrf integrative-analysis disease-gene-association
Language:R 1
alexwky / missLASSO
Penalized regression for multiple types of many features with missing data using expectation-maximization (EM) algorithm.
adaptive-lasso factor-models integrative-analysis multi-modality-data multi-platform-genomics-studies penalized-regression
0
sggao / Sparse-Generalized-Correlation-Analysis
MATLAB and R Code for sparse GCA
canonical-correlation-analysis integrative-analysis machine-learning-algorithms
Language:MATLAB