integrative-analysis

There are 0 repository under integrative-analysis topic.

• BioinformaticsFMRP / TCGAbiolinks

  TCGAbiolinks

  biocbioconductorgdcintegrative-analysisrtcgatcga-datatcgabiolinks
  Language:R 310

• Bohdan-Khomtchouk / Biochat

  Natural language processing of Gene Expression Omnibus data

  natural-language-processingmetadataintegrative-analysismetadata-extractioncommon-lispgene-expression-omnibusnlplispbioinformaticscomputational-biology
  Language:Common Lisp 53

• xqwen / fastenloc

  Colocalization analysis of genetic association signals

  bioinformaticsbioinformatics-analysisgenetic-association-analysisintegrative-analysiscolocalization
  Language:C++ 51

• KChen-lab / bindSC

  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

  single-cell-analysisintegrative-analysis
  Language:R 34

• sqjin / scAI

  An unsupervised approach for the integrative analysis of single-cell multi-omics data

  integrative-analysissimultaneous-measurementssingle-cell-multimodal-omicssingle-cell-multiomicssparse-epigenomic-profile
  Language:R 29

• corbinq / GAMBIT

  Tool for integrative gene-based association analysis using GWAS summary stats

  gwasgwas-summary-statisticsgene-basedgenetic-analysistwasintegrative-analysisfunctional-annotationgenetic-epidemiologyregulatory-elements
  Language:C++ 12

• shu-hai / D-CCA

  A Decomposition-based Canonical Correlation Analysis for High-dimensional Datasets (JASA-20 paper)

  multiblock-structuresmultiviewdata-integrationdata-fusionintegrative-analysishigh-dimensional-data
  Language:Python 11

• samhinshaw / metabridge_shiny

  🕸 Network-based multi-omic integration of metabolomics data.

  integrative-analysisshinyrstatsbioinformaticsmetabolomics
  Language:R 9

• AberystwythSystemsBiology / pyMEAN

  A Python package for metabolite enrichment analysis.

  metabolomicsmetabolomics-pipelineintegrative-analysispathway-enrichment-analysis
  Language:Python 8

• inukj / MONTI

  MONTI is a tool for analyzing large multi-omics cancer cohort data in association with clinical featuers

  multi-omicsintegrative-analysis
  Language:Jupyter Notebook 5

• fchen365 / surf

  The statistical utility for RBP functions (SURF)

  packagerna-seqclip-seqintegrative-analysissurfdifferential-analysisalternative-splicing
  Language:R 2

• hancockinformatics / MetaBridgeShiny

  Repository for the MetaBridge Shiny app.

  integrative-analysisshinybioinformaticsmetabolomicsutility
  Language:R 2

• ParkerLab / 2021_islet-rfx6

  Code for Walker, Saunders, Rai et al., (2021).

  isletssingle-cellmultiomeintegrative-analysisgwasatac-seqrna-seqcodexwgcnarfx6pancreasalpha-cellbeta-cells
  Language:Roff 2

• jokergoo / epik

  Integrative analysis for epigenomic sequencing data

  integrative-analysis
  Language:HTML 1

• JunWangmath / GeP-HMRF

  Hidden Markov Random Field Model - Inferring Gene-Disease Association by an Integrative Analysis of eQTL GWAS and Protein-Protein Interaction data

  eqtlgwashidden-markov-random-fieldhmrfintegrative-analysisdisease-gene-association
  Language:R 1

• alexwky / missLASSO

  Penalized regression for multiple types of many features with missing data using expectation-maximization (EM) algorithm.

  adaptive-lassofactor-modelsintegrative-analysismulti-modality-datamulti-platform-genomics-studiespenalized-regression
  0

• sggao / sparse-gca

  MATLAB and R Code for sparse GCA

  canonical-correlation-analysisintegrative-analysismachine-learning-algorithms
  Language:MATLAB 0