Mazurowski Lab

segment-anything-medical-evaluation

Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis

finetune-SAM

This is an official repo for fine-tuning SAM to customized medical images.

segmentation-guided-diffusion

[MICCAI 2024] Easy diffusion models (optionally with segmentation guidance) for medical images and beyond.

SegmentAnyBone

SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI

duke-dbt-data

3D-Breast-FGT-and-Blood-Vessel-Segmentation

MRI-deeplearning-tutorial

Source code for my blog post tutorial about how to use deep learning on MR images.

osteoarthritis-classification

this is a implementation for knee KL score prediction.

ContourDiff

Contour-Guided Diffusion Models for Unpaired Image-to-Image Translation

intrinsic-properties

[ICLR 2024] Easy tools for measuring the label sharpness and intrinsic dimension of datasets and learned representations, which relate to model generalization and robustness.

SlicerSegmentWithSAM

3D Slicer extension for Segment Anything Model (SAM) developed by Meta

picard-anomalydetection

Pluralistic Image Completion for Anomaly Detection (Med. Image Anal. 2023)

single-image-test-time-adaptation

Single-image test-time domain adaptation for segmentation models.

radiologyintrinsicmanifolds

(MICCAI 2022) Code for "The Intrinsic Manifolds of Radiological Images and their Role in Deep Learning" (intrinsic dimensions)

DBT-cancer-detection-algorithms

Library of lesion detection algorithm codebases from the DBTex Digital Breast Tomosynthesis Lesion Detection Challenge

swssl-for-anomaly-detection

SWSSL - Sliding window-based self-supervised learning for anomaly detection in high-resolution images (IEEE Trans. on Medical Imaging 2023)

DBTex-baseline

This is a baseline neural network model for breast tumor detection on the BCS-DBT dataset, to accompany the DBTex challenge.

MRI-parameter-prediction

(MIDL 2023) Code for "Reverse Engineering Breast MRIs: Predicting Acquisition Parameters Directly from Images"

breastMRI_styletransfer

Code for our paper "Deep Learning for Breast MRI Style Transfer with Limited Training Data".

Supermask

SlicerSegmentHumanBody

3D Slicer extension for SegmentAnyBone developed by Mazurowski Lab

ExtensionsIndex

Slicer extensions index

ExtensionsIndexStable

Slicer extensions index

knee_clf

SlicerExtensionsIndex

Slicer extensions index