Chan Zuckerberg Biohub San Francisco's repositories
tabula-muris-senis
Tabula Muris Senis
tabula-sapiens
Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
Rapid-QC-MS
Realtime quality control for mass spectrometry data acquisition
protoSpaceJAM
CRISPR knock-in design at scale
Organelle_IP_analyses_and_figures
Jupyter notebooks for analysis and figures related to the native organelle IP paper
celltype_annotation_tutorial
A repository for notebooks, figures, and utilities for cell-type annotation tutorial manuscript using CZ CELLxGENE ecosystem
CovidTissueAtlas
UCSF Covid Tissue Atlas
CRISPRflow
MAGeCK analysis automated by Nextflow
GenoPrimer
Automated primer design for genotyping CRISPR edited cells
zebrahub_analysis
Analysis of single-cell single-embryo RNA seq data from the zebrafish developmental atlas Zebrahub.
2023-facs-automation-pub
Python libraries for automating cell sorting with the Sony SH800S GUI.
automated-protein-purifier
Contains Python application and czpurifier package for automated protein purification
portable-luminometer
Software and electronics for the portable SiPM luminometer.
special_ops_crispr_tools
Computational tools for identifying CRISPR targets and offtargets.
DeepGenotype
Calculate the outcome genotype frequencies in CRISPR genome editing experiments using deep sequencing reads.
rapid-response-prism
Phylogenetic analysis of various respiratory viruses captured during the PRISM study in Uganda.