life-sciences-image

There are 1 repository under life-sciences-image topic.

• cgohlke / tifffile

  Read and write TIFF files

  format-readerimageimagejlife-sciences-imagenumpyome-tiffpythontiffwhole-slide-imagingzarr
  Language:Python 497

• ome / bioformats

  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  bio-formatsjavaimagelife-sciences-imageformat-readerformat-convertermetadatawhole-slide-imagingwsilightsheet
  Language:Java 367

• ISA-tools / isa-api

  ISA tools API

  pythonisadata-managementlife-sciences-imageexperimental-metadata
  Language:Jupyter Notebook 40

• ciccalab / SIMPLI

  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

  cell-segmentationsingle-cell-analysisimaging-mass-cytometryimmunofluorescencehistological-imagesgatingtissue-analysistissue-classificationhistologybioimage-analysisbioimagingbioimage-toolsbioimage-informaticsmcdimclife-sciences-imageome-tiffimage-analysis-workflows
  Language:R 33

• aws-samples / amazon-sagemaker-cell-segmentation-workshop

  This workshop outlines a machine-learning cell segmentation architecture from scratch for the life-sciences vertical, using Amazon SageMaker, S3, Lambda and SageMaker Inference endpoints

  cell-segmentationlambdalife-scienceslife-sciences-images3sagemakersagemaker-inference
  Language:Jupyter Notebook 5

• cgohlke / ptufile

  Read PicoQuant PTU and related files

  flimfluorescence-lifetime-spectroscopyfluorescence-microscopy-imagingformat-readerlife-sciences-imagephoton-countingpicoquantptupythontttr
  Language:Python 4