Open Microscopy Environment's repositories
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
napari-ome-zarr
A napari plugin for zarr backed OME-NGFF images
omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
omero-iviewer
An OMERO.web app allowing to view images
omero-figure
An OMERO.web app for creating Figures from images in OMERO
omero-cli-transfer
An OMERO CLI plugin for creating transfer packets between OMERO servers.
ome2024-ngff-challenge
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
bio-formats-documentation
Bio-Formats documentation
omero-insight
Gradle project containing insight java client for OMERO
omero-web-docker
OMERO.web production docker image
www.openmicroscopy.org
OME main website
ome_zarr_test_suite
Test suite of reader and writer implementations
prod-playbooks
Playbooks used by the OME team for deploying production services including OMERO
ome-common-java
Java library providing common functionality for all OME Java components
bio-formats-build
Bio-Formats top-level build for all components
omero-build
OMERO top-level build for all components
omero-demo-cleanup
A CLI plugin for managing the disk space on the OME demo server
omero-gateway-java
Gradle project containing OMERO Java Client Library
omero-plugins
Collection of OMERO extensions (plugins, apps)
ansible-role-analysis-tools
Useful tools for running high-throughput analyses.
meeting-minutes
Minutes from the weekly OME community meetings
omero-python-superbuild
OMERO build for Python server components