Open Microscopy Environment (ome)

Open Microscopy Environment

ome

Geek Repo

Software and data format standards for management of microscopy image data. Joint project between international private and public research

Home Page:https://www.openmicroscopy.org/

Twitter:@openmicroscopy

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Open Microscopy Environment's repositories

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

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openmicroscopy

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

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ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

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ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

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napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

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omero-documentation

Sphinx-based documentation for the Open Microscopy Environment

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omero-iviewer

An OMERO.web app allowing to view images

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omero-web

Django-based OMERO.web client

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omero-figure

An OMERO.web app for creating Figures from images in OMERO

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omero-cli-transfer

An OMERO CLI plugin for creating transfer packets between OMERO servers.

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ome2024-ngff-challenge

Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

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bio-formats-documentation

Bio-Formats documentation

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omero-insight

Gradle project containing insight java client for OMERO

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omero-web-docker

OMERO.web production docker image

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www.openmicroscopy.org

OME main website

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ome_zarr_test_suite

Test suite of reader and writer implementations

prod-playbooks

Playbooks used by the OME team for deploying production services including OMERO

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ome-common-java

Java library providing common functionality for all OME Java components

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bio-formats-build

Bio-Formats top-level build for all components

omero-build

OMERO top-level build for all components

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omero-demo-cleanup

A CLI plugin for managing the disk space on the OME demo server

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omero-gateway-java

Gradle project containing OMERO Java Client Library

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omero-plugins

Collection of OMERO extensions (plugins, apps)

upptime

📈 Uptime monitor and status page for OME, powered by @upptime

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ansible-role-analysis-tools

Useful tools for running high-throughput analyses.

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meeting-minutes

Minutes from the weekly OME community meetings

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omero-python-superbuild

OMERO build for Python server components

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