neugun

Zhenggang Zhu's repositories

EASEQ-FISH

A integrated analysis toolbox for 3D spatial transcriptome, enables highly accurate 3D registration for large volume images, and provides barcoding and decoding analysis for spatial transcriptome of thick tissue.

Language:Jupyter NotebookMIT1 10

NeuralDataScienceCSHL2019

Coding exercises for Neural Data Science at CSHL in 2019

Language:Jupyter Notebook100

System-neuroscience-scripts

neural circuits

Language:Matlab1 10

actogrammr

read activity data and plot actograms

Language:R010

CaRMA-imaging

Language:HTMLGPL-3.0000

CNMF_E

Constrained Nonnegative Matrix Factorization for microEndoscopic data

Language:MATLABGPL-3.0010

course_RNA-seq2019

000

DeepLabCut

Markerless pose estimation of user-defined features with deep learning for all animals, including humans

Language:PythonLGPL-3.0010

Development

Language:Matlab010

EphysToolbox

Like any toolbox, these files are multipurpose, and don't change often.

Language:Matlab000

facemap

matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

GPL-3.0000

flexDrive

Compact hyperdrive for up to 16 independently movable electrodes

Language:Eagle010

github.com

In search of need gate-keeper

020

gramm

Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualizations. Gramm is inspired by R's ggplot2 library.

Language:MATLABMIT010