napari-plugin

There are 7 repositories under napari-plugin topic.

• napari-clusters-plotter

  BiAPoL / napari-clusters-plotter

  A napari plugin for clustering objects according to their properties.

  clusteringnapari-pluginplottingpython
  Language:Python 64

• chanzuckerberg / napari-hub

  Discover, install, and share napari plugins

  analysisbioimagingdeep-learningdenoisingdetectionimagingmachine-learningnaparinapari-pluginpluginspythonregistrationsegmentationthemestracking
  Language:TypeScript 46

• haesleinhuepf / napari-skimage-regionprops

  Feature extraction for labeled objects in images using regionprops from scikit-image

  napariskimagenapari-plugin
  Language:Python 46

• haesleinhuepf / napari-accelerated-pixel-and-object-classification

  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.

  napari-plugin
  Language:Python 41

• haesleinhuepf / devbio-napari

  napari-plugin
  Language:Python 40

• matplotlib / napari-matplotlib

  Linking napari layers with Matplotlib plots

  matplotlibnaparinapari-pluginplottingpython
  Language:Python 39

• stardist / stardist-napari

  StarDist plugin for napari

  cell-segmentationdeep-learningnuclei-segmentationobject-detectionnaparinapari-plugin
  Language:Python 32

• SuperElastix / elastix-napari

  A napari plugin for itk-elastix

  naparinapari-pluginelastixitkelastix
  Language:Python 32

• tlambert03 / napari-omero

  Browse your OMERO database from within napari.

  napari-pluginomeronapari
  Language:Python 32

• clEsperanto / napari_pyclesperanto_assistant

  GPU-accelerated general purpose image processing and image analysis in napari

  napari-pluginnaparipyopenclclesperantoimage-processingimage-segmentation
  Language:Python 31

• scverse / napari-spatialdata

  Interactive visualization of spatial omics data

  naparinapari-pluginspatial-analysisspatial-omicsvisualization
  Language:Python 31

• ome / napari-ome-zarr

  A napari plugin for zarr backed OME-NGFF images

  napari-pluginngffpythonzarr
  Language:Python 24

• brainglobe / cellfinder-napari

  Efficient cell detection in large images using cellfinder in napari

  napari-plugincellfindernaparicell-detectionobject-detectionresnettensorflowkeras
  Language:Python 23

• haesleinhuepf / napari-process-points-and-surfaces

  Process and analyze surfaces using vedo in napari.

  napari-plugin
  Language:Python 21

• haesleinhuepf / napari-segment-blobs-and-things-with-membranes

  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

  napari-plugin
  Language:Python 20

• haesleinhuepf / napari-cupy-image-processing

  napari-plugin
  Language:Python 19

• GuignardLab / napari-sc3D-viewer

  A plugin to visualise 3D spatial single cell omics

  3dnaparinapari-pluginpythonspatial-transcriptomics
  Language:Python 18

• haesleinhuepf / napari-simpleitk-image-processing

  Process images using SimpleITK in napari

  napari-plugin
  Language:Python 18

• AllenCell / napari-allencell-segmenter

  A plugin that enables image segmentation provided by Allen Institute for Cell Science

  napari-pluginnaparinapari-allencell-segmenter
  Language:Python 17

• haesleinhuepf / napari-plot-profile

  napari-plugin
  Language:Python 17

• haesleinhuepf / napari-workflow-optimizer

  Optimize image processing workflows in napari

  napari-plugin
  Language:Python 17

• haesleinhuepf / natari

  Napari gaming

  napari-plugin
  Language:Python 16

• LIDS-UNICAMP / grabber

  Grabber: A Tool to Improve Convergence in Interactive Image Segmentation

  grabberimage-segmentationlivewireimage-foresting-transformnapari-plugin
  Language:Python 16

• volume-em / empanada-napari

  Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

  deep-learningelectron-microscopymitochondriapanoptic-segmentationinstance-segmentation3d2dnapari-plugin
  Language:Python 15

• ilastik / ilastik-napari

  ilastik plugin for napari

  ilastiknapari-plugin
  Language:Python 12

• brainglobe / brainglobe-napari-io

  Read and write files from the BrainGlobe neuroanatomy suite

  napari-plugin
  Language:Python 11

• haesleinhuepf / napari-brightness-contrast

  napari-plugin
  Language:Python 11

• janclemenslab / napari-video

  Napari plugin for working with video files.

  napari-pluginvideoopencv
  Language:Jupyter Notebook 11

• Chris-N-K / napari-time-series-plotter

  A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.

  image-analysisnaparinapari-pluginplottingtime-seriestime-series-analysistimeseriestimeseries-analysisnapari-visualizationpythonpython3qt
  Language:Python 10

• haesleinhuepf / napari-script-editor

  A python script editor plugin for napari

  napari-plugin
  Language:Python 10

• PolusAI / bfio

  Interface to the Bioformats Java library

  napari-pluginimage-processingimage-io
  Language:Python 10

• brainglobe / napari-brainreg

  Visualise brainreg registration output

  napari-plugin
  Language:Python 9

• PolarizedLightFieldMicroscopy / napari-LF

  Light field imaging plugin for napari

  napari-plugin
  Language:Python 9

• haesleinhuepf / napari-blender-bridge

  Transfer surface layers between Napari and Blender.

  napari-plugin
  Language:Python 8

• haesleinhuepf / napari-workflow-inspector

  Inspect relationships between napari-plugins in active workflows.

  napari-plugin
  Language:Python 8

• TileDB-Inc / napari-tiledb-bioimg

  TileDB BioImaging plugin for Napari

  bioimagingnaparinapari-plugintiledb
  Language:Python 7