converting_utility
converter raw sequence files
Usage: python utility.py -i [ input file with path ] -o [ output ID ] -p [ output path ] -t [ selection between 'fastq2fasta','fasta2tab','seqrename','tab2fasta' ] -r [ 1 or 2 ]
Options: --version show program's version number and exit -h, --help show this help message and exit -i INPUT input fasta,fastq,tabular file included path -o OUTPUT Output Id -p PATHOUT Output Pathway -t T Insert fastq2fasta for conversion fastq to fasta; Insert fasta2tab per conversion to Fasta to Tabular; Insert seqrename for change read name with generic seq+line num; Insert tab2fasta to convert tabular file (2 columns, firt with reads name without '>' and second with sequence.) -r R 1=forward;2=reverse