Computational Biology Laboratory

Computational Biology Laboratory's repositories

cryfa

A secure encryption tool for genomic data

Language:C++GPL-3.062 4 1

gto

A genomics-proteomics toolkit

Language:CMIT46 110

falcon

A tool to infer metagenomic sample composition

Language:CGPL-3.021 1 4

geco3

An efficient DNA sequence compressor using Neural Networks

Language:CGPL-3.014 2 5

alcor

Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data

Language:CGPL-3.011 2 1

altair

AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data

Language:CGPL-3.010 20

geco2

An improved compression tool for DNA sequences

Language:CGPL-3.09 3 1

jarvis

Efficient lossless compression of genomic sequences

Language:CGPL-3.08 40

jarvis3

Efficient compression of biological data

Language:CGPL-3.07 1 5

ac2

An efficient amino acid sequence compressor using Neural Networks

Language:CGPL-3.06 30

chester

A memory efficient tool to map and visualize evolutionary regions

Language:CGPL-3.06 20

eagle

An ultra-fast tool to find relative absent words in genomic data

Language:CGPL-3.05 20

HumanGenome

How compressible is a human genome sequence?

Language:ShellGPL-3.05 20

RFSC

Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples

Language:ShellGPL-3.04 4 1

jarvis2

Efficient DNA sequence compression

Language:CGPL-3.03 1 1

CassavaGenome

How compressible is a Cassava genome sequence?

Language:ShellGPL-3.02 10

cobilab.github.io

Cobilab website

Language:JavaScriptMIT2 20

cpm-fcm

An encoder for biological sequences using Copy Models and Finite-context models

GPL-3.02 10

magnet

An ultra-fast and high-sensitive tool to filter specific DNA content

Language:CGPL-3.02 20

smashpp

Find and visualize rearrangements in DNA sequences

Language:C++GPL-3.02 10

evo

Evolutionary patterns in SARS-CoV-2 genomes

Language:CGPL-3.01 20

FABench

Language:ShellGPL-3.0100

FASTA-ANALYSIS

Sorting of DNA sequences within a Multi-Fasta file

Language:ShellGPL-3.01 10

MizaR

A sorting method for encoding metagenomic data

Language:ShellGPL-3.01 10

nn-expert-mixer

Language:C++GPL-3.01 20

OAWK

Language:ShellGPL-3.01 10

OptimJV3

Optimize compression parameters of Jarvis3

Language:ShellGPL-3.01 10

spark

This program schools, simulates, and searches for exact or approximate Turing Machines (TMs) with specific characteristics.

Language:CGPL-3.01 20

SynTegra

A computational tool for simulation of viral synthetic integrations

Language:CGPL-3.01 20

CompressSequences

How compressible are sequences?

Language:ShellGPL-3.0000