Bioinformatics Group @ SMU

clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

enrichplot

Visualization of Functional Enrichment Result

ChIPseeker

:dart: ChIP peak Annotation, Comparison and Visualization

MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome

DOSE

:mask: Disease Ontology Semantic and Enrichment analysis

treeio

:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output

aplot

Decorate a plot with associated information

ggtreeExtra

:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

GOSemSim

:golf: GO-terms Semantic Similarity Measures

scatterpie

:art: scatter pie plot

tidytree

:shower:A Tidy Tool for Phylogenetic Tree Data Manipulation

fanyi

Translate Words or Sentences via Online Translators

ReactomePA

Reactome Pathway Analysis

ggsc

🧠 Visualizing Single Cell and Spatial Transcriptomics

MicrobiomeProfiler

:microbe: A shiny package for microbiome functional enrichment analysis

seqcombo

Visualization tool for genetic reassortment

ggfun

useful functions for ggplot

ggtreeDendro

Drawing 'dendrogram' using 'ggtree'

yulab-smu.github.io

:house: Homepage for YuLab-SMU

meshes

:stethoscope: MeSH Enrichment and Semantic analyses

aplotExtra

Creating composite plot using 'aplot'

clusterProfiler_protocol

omics data analysis using clusterProfiler ;)

tigeR

🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package

ggtreeSpace

🕸️Exploring phylomorphospace using 'ggtree'

learnggtree

Tutorial for Learning 'ggtree'

wikiprofiler

SVP

obolite

Create sqlite from an obo file

tigeR.data