microarray

There are 2 repositories under microarray topic.

mikelove / bioc-refcard
Bioconductor cheat sheet
bioconductor bioinformatics r rnaseq compbio guide howto cheatsheet microarray
Language:R 182
guma44 / GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
bioinformatics geo-database high-throughput-sequencing htseq microarray rna-seq rna-sequencing
Language:Jupyter Notebook 131
zwdzwd / sesame
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
dna-methylation bioinformatics microarray
Language:R 48
nf-core / differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
nextflow nf-core pipeline workflow atac-seq chip-seq deseq2 differential-abundance differential-expression gsea limma microarray rna-seq shiny
Language:Nextflow 46
greenelab / TDM
R package for normalizing RNA-seq data to make them comparable to microarray data.
data-processing microarray package r rna-seq
Language:R 36
greenelab / RNAseq_titration_results
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
bioinformatics rnaseq microarray normalization machine-learning cancer supplement analysis gene-expression
Language:HTML 34
gustaveroussy / EaCoN
Easy Copy Number !
copy-number exome-sequencing microarray r segmentation
Language:R 20
Bohdan-Khomtchouk / HeatmapGenerator
Cross-platform GUI desktop application for making biological heatmaps
c-plus-plus computational-biology gui-application heatmap lightweight microarray opengl r-programming rna-seq
Language:C 19
allielarocco / Microarray-Analysis
Microarray Analysis Pipeline in Python
microarray microarray-studies microarray-experiments pipeline enrichment-analysis differential-expression differentially-expressed-genes ncbi-geo ncbi-database ncbi-submission
Language:Jupyter Notebook 18
dlaperriere / GEO_microarrays
analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
microarray limma bioinformatics ncbi-geo
Language:Python 10
HenrikBengtsson / aroma.affymetrix
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
r package affymetrix copy-number expression dna rna analysis microarray large-scale reproducibility hpc notebook
Language:R 10
tarlaun / BioInf_Project
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
acute-myeloid-leukemia aml bioinformatics genetic-expression-omnibus geoparse microarray microarray-data microarray-data-analysis
Language:Python 8
Pytorch-UNet-2
upashu1 / Pytorch-UNet-2
UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images
unet-image-segmentation unet-pytorch unet unet-model unet2 microarray image-segmentation microarray-image-segmentation-cnn microarray-deep-learning pytorch image-segmenation-unet cnn
Language:Python 8
ahmedmoustafa / gene-expression-datasets
Collection of gene expression datasets
microarray-data microarray microarray-data-analysis gene-expression transciptomics rna-seq rna-seq-datasets datasets
7
viktormiok / PhD-thesis
Latex scripts to compile my PhD thesis
multivariate-timeseries splines ridge-regression rna-seq microarray cervical-cancer gene-regulatory-network-inference
Language:TeX 5
shyammarjit / SAGA
SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data
feature-selection gene genetic-algorithm microarray omics simulated-annealing
Language:Jupyter Notebook 4
idssplab / overall_survival_nsclc
bimodal DNN for NSCLC patient overall survival prediction
deep-learning deep-neural-networks bioinformatics bimodal-multicast biomarkers non-small-cell-lung-cancer microarray clinical-data prognostic-biomarkers overall-survival-prediction
3
TCP-Lab / bioTEA
bioTEA - A user friendly tool to perform transcript expression analysis
bioinformatics-tool command-line-tool differential-gene-expression docker linux microarray python transcriptomics
Language:Python 3
viktormiok / BioFig
R package for visualization of omics data
rna-seq microarray proteomics quality-control
Language:R 3
viktormiok / tigaR
Temporal Integrative Genomics Analysis in R
differential-gene-expression inla empirical-bayes microarray rna-seq
Language:R 3
XPRESSyourself / XPRESSplot
A toolkit for navigating and analyzing gene expression datasets
rna-seq microarray rnaseq plotting analysis visualization genomics
Language:Python 3
draeger-lab / InCroMAP
Integrated analysis of Cross-platform MicroArray and Pathway data
microarray pathway-analysis visualization data-integration
Language:Java 2
GrosseLab / BGSC
Bayesian Gene Selection Criterion (BGSC) approach
microarray differential-gene-expression reproducible-research r statistical-models
Language:R 2
michaeltneylon / spark_rma
SparkRMA: Robust Multi-array Average (RMA) In Apache Spark
microarray rma spark preprocessing scalable
Language:Python 2
viktormiok / PhD-thesisSM
PhD thesis supplementary materials
multivariate-timeseries splines ridge-regression rna-seq microarray cervical-cancer
Language:TeX 2
viktormiok / tigaRcycle
An R package for utilities to guide in-depth detection of circadian signals from omics time series data
r circadian-rhythmicity cycling omics-data microarray rna-seq
Language:Jupyter Notebook 2
anacarolina-estat / Iniciacao-Cientifica-CNPq
Projeto de Iniciação Científica desenvolvido na Unicamp e financiado pelo CNPq com o tema: Métodos de aprendizado de máquina supervisionado para classificação aplicados a dados de microarranjo de DNA.
machine-learning r estatistica microarray
1
cemordaunt / AutismCordBloodExpression
Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies
microarray affymetrix gene-expression autism meta-analysis
Language:R 1
gauravcodepro / plant-microarray-analysis
plant microarray analysis
microarray microarray-analysis microarray-data-analysis microarray-experiments
Language:R 1
gustaveroussy / apt.cytoscan.2.4.0
Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)
r affymetrix microarray normalization
Language:R 1
kalyaniuniversity / mgx-datasets
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
datasets datascience microarray microarray-data-analysis geneexpression ncbi ncbi-database ncbi-geo python preprocessing preprocess-dataset
Language:Python 1
RGLab / HIPCMatrix
Utilities for processing and analyzing HIPC gene expression data in ImmuneSpace
hipc immport immunespace microarray rna-seq
Language:R 1
SamThilmany / microarray-analysis_treatment-kinetics
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
limma microarray microarray-data microarray-data-analysis r
Language:R 1
SaradhaVenkatachalapathy / Cell_Shape_TNF_alpha_PNAS_2017
Analysis in the paper Mitra et.al. PNAS 2017.
microarray inflammation cell-shape filament-detection
1
soumyabrataghosh / pd.mirna.4.1
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
omics microarray annotations
Language:R 1
tiagochavo87 / LCSH_analysis
Analysis of long continuous stretches of homozygosity of the human genome.
bioinformatics bioinformatics-analysis cromosome genome-analysis homozygosity lcsh microarray microarray-data-analysis python
Language:Jupyter Notebook 1

microarray

mikelove / bioc-refcard

guma44 / GEOparse

zwdzwd / sesame

nf-core / differentialabundance

greenelab / TDM

greenelab / RNAseq_titration_results

gustaveroussy / EaCoN

Bohdan-Khomtchouk / HeatmapGenerator

allielarocco / Microarray-Analysis

dlaperriere / GEO_microarrays

HenrikBengtsson / aroma.affymetrix

tarlaun / BioInf_Project

upashu1 / Pytorch-UNet-2

ahmedmoustafa / gene-expression-datasets

viktormiok / PhD-thesis

shyammarjit / SAGA

idssplab / overall_survival_nsclc

TCP-Lab / bioTEA

viktormiok / BioFig

viktormiok / tigaR

XPRESSyourself / XPRESSplot

draeger-lab / InCroMAP

GrosseLab / BGSC

michaeltneylon / spark_rma

viktormiok / PhD-thesisSM

viktormiok / tigaRcycle

anacarolina-estat / Iniciacao-Cientifica-CNPq

cemordaunt / AutismCordBloodExpression

gauravcodepro / plant-microarray-analysis

gustaveroussy / apt.cytoscan.2.4.0

kalyaniuniversity / mgx-datasets

RGLab / HIPCMatrix

SamThilmany / microarray-analysis_treatment-kinetics

SaradhaVenkatachalapathy / Cell_Shape_TNF_alpha_PNAS_2017

soumyabrataghosh / pd.mirna.4.1

tiagochavo87 / LCSH_analysis