geneset-enrichment

There are 1 repository under geneset-enrichment topic.

• ToledoEM / msigdf

  Molecular Signatures Database (MSigDB) in a data frame

  geneontologygenesgeneset-enrichmentgenesetsgenomicsgenomics-datagseamsigdbrr-packagereference-datatidy-datatidyverse
  Language:HTML 22

• nasqar / ClusterProfShinyGSEA

  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

  geneset-enrichmentgeneset-enrichment-analysisgseaweb-applicationshiny-appsrkeggkegg-pathwayvisualizationbioinformatics
  Language:R 17

• nasqar / ClusterProfShinyORA

  A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries

  over-representation-analysisgeneset-enrichmentweb-applicationshiny-appsshinyrkeggkegg-pathwaybioinformaticsvisualization
  Language:R 11

• kevinrue / GOexpress

  Analysies of gene expression data using Gene Ontology

  bioconductor-packagebioconductorbioconductor-statsgeneontologygeneset-enrichment
  Language:R 9

• GangLiLab / geneset

  Get gene sets for gene enrichment analysis (GEA)

  enrichment-analysisgenegeneset-enrichment
  Language:R 7

• NicolasH2 / gggsea

  GSEA plots in ggplot2

  gseageneset-enrichmentgeneset-enrichment-analysisgenesetggplot2graph
  Language:R 7

• ftwkoopmans / goat

  GOAT: efficient and robust identification of gene set enrichment

  bioinformaticsgeneset-enrichmentgeneset-enrichment-analysis
  Language:R 4

• sartorlab / chipenrich

  This is the fork of the Bioconductor-mirror repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/chipenrich.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=chipenrich.

  chip-seqgeneset-enrichmenttranscription-factorshistone-modifications
  Language:R 2

• jzhangc / git_RBioArray

  Simple to use package for OMICS data analysis (featuring limma, WGCNA, GSEA)

  rnasequnsupervised-machine-learningnetwork-analysisgeneset-enrichmentmirnamicroarrayproteomics
  Language:R 1